Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Alpha-amylase

Gene

VIBHAR_04858

Organism
Vibrio campbellii (strain ATCC BAA-1116 / BB120)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. alpha-amylase activity Source: InterPro
  2. calcium ion binding Source: InterPro

GO - Biological processi

  1. alpha-glucan catabolic process Source: InterPro
  2. cellular oligosaccharide catabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciVHAR338187:GJCH-3844-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylaseImported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Ordered Locus Names:VIBHAR_04858Imported
ORF Names:M892_26835Imported
OrganismiVibrio campbellii (strain ATCC BAA-1116 / BB120)Imported
Taxonomic identifieri338187 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000008152: Chromosome II

Subcellular locationi

GO - Cellular componenti

  1. periplasmic space Source: InterPro
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi338187.VIBHAR_04858.

Structurei

3D structure databases

ProteinModelPortaliA7N5N0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000273912.
KOiK01176.
OMAiLRSFMNW.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

A7N5N0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLNLITTTL LLASASAIAE PNITISTTTN SRDFPLSAEQ SLVVPLTKDG
60 70 80 90 100
YTLKITGVEG DCVAPDGQKV KFNKPIALNC GKPTELPLKI RFTGDYSFAF
110 120 130 140 150
DAEAKTLRFK REPKKAAKTE FKRPIPKVQC EVYQGGEVTI ALGDSFPDGT
160 170 180 190 200
KLRDAYSGQM VEVKDQQVSL TPSKDSGGLV LLEPVKKTKE AVPFDYRNAN
210 220 230 240 250
IYFVMVDRFN NADTSNDNSY GRNKDGKEEI GTFHGGDLKG VIEKLDYIKS
260 270 280 290 300
LGTDAIWLSP IVEQVHGFVG GGDSGSFPFY AYHGYWTRDF TKIDENFGDE
310 320 330 340 350
DDLKLLVEEA HKRGLKVLMD AVINHTGYST LADLQFDGIE VLKPNADLPK
360 370 380 390 400
KWGDWQPKAG ENWHSYHQNI DYQSPNWAKW WGGDWVRTGL PGYPAPGSSD
410 420 430 440 450
ITLSLAGLPD FITESDKAVK PAQWLLDNPG TGVEARDNYT VSDYLIEWQT
460 470 480 490 500
DWVKRFGIDG YRVDTVKHVE GDVWKRLKEE ASSSLEQWRK ENGKSGQPFW
510 520 530 540 550
MMGEVWGHTA YRSPYFDDGF DALINFDMQR KLDKGAACFS QMADTYQSYA
560 570 580 590 600
NTIANEKDFN PVSYMSSHDT ELFFSRFKDY GMQRNAANAL LLGPGAVQVY
610 620 630 640 650
YGDEVGRNIG PYADDFHQGT RSDMVWKLSD EKQALLKHWQ TLGQFRKAHP
660 670 680
AIGAGQHQVI EQEGAYVFSR SLGNDKVVVA FVGREK
Length:686
Mass (Da):76,842
Last modified:October 2, 2007 - v1
Checksum:iC911EDAC593A5A71
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000790 Genomic DNA. Translation: ABU72766.1.
CP006606 Genomic DNA. Translation: AGU98048.1.
RefSeqiYP_001446993.1. NC_009784.1.
YP_008529909.1. NC_022270.1.

Genome annotation databases

EnsemblBacteriaiABU72766; ABU72766; VIBHAR_04858.
AGU98048; AGU98048; M892_26835.
GeneIDi16819716.
5558353.
KEGGivca:M892_26835.
vha:VIBHAR_04858.
PATRICi20134267. VBIVibHar24526_3623.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000790 Genomic DNA. Translation: ABU72766.1.
CP006606 Genomic DNA. Translation: AGU98048.1.
RefSeqiYP_001446993.1. NC_009784.1.
YP_008529909.1. NC_022270.1.

3D structure databases

ProteinModelPortaliA7N5N0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi338187.VIBHAR_04858.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABU72766; ABU72766; VIBHAR_04858.
AGU98048; AGU98048; M892_26835.
GeneIDi16819716.
5558353.
KEGGivca:M892_26835.
vha:VIBHAR_04858.
PATRICi20134267. VBIVibHar24526_3623.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000273912.
KOiK01176.
OMAiLRSFMNW.
OrthoDBiEOG65QWH3.

Enzyme and pathway databases

BioCyciVHAR338187:GJCH-3844-MONOMER.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-1116Imported and ATCC BAA-1116 / BB120Imported.
  2. "Vibrio campbellii hmgA-mediated pyomelanization impairs quorum sensing, virulence, and cellular fitness."
    Wang Z., Lin B., Mostaghim A., Rubin R.A., Glaser E.R., Mittraparp-Arthorn P., Thompson J.R., Vuddhakul V., Vora G.J.
    Front. Microbiol. 4:379-379(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: ATCC BAA-1116Imported.

Entry informationi

Entry nameiA7N5N0_VIBCB
AccessioniPrimary (citable) accession number: A7N5N0
Entry historyi
Integrated into UniProtKB/TrEMBL: October 2, 2007
Last sequence update: October 2, 2007
Last modified: January 7, 2015
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.