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A7MY69

- KDSA_VIBCB

UniProt

A7MY69 - KDSA_VIBCB

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Protein

2-dehydro-3-deoxyphosphooctonate aldolase

Gene

kdsA

Organism
Vibrio campbellii (strain ATCC BAA-1116 / BB120)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

Phosphoenolpyruvate + D-arabinose 5-phosphate + H2O = 2-dehydro-3-deoxy-D-octonate 8-phosphate + phosphate.UniRule annotation

Pathwayi

GO - Molecular functioni

  1. 3-deoxy-8-phosphooctulonate synthase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. keto-3-deoxy-D-manno-octulosonic acid biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Transferase

Keywords - Biological processi

Lipopolysaccharide biosynthesis

Enzyme and pathway databases

BioCyciVHAR338187:GJCH-1244-MONOMER.
UniPathwayiUPA00030.
UPA00357; UER00474.

Names & Taxonomyi

Protein namesi
Recommended name:
2-dehydro-3-deoxyphosphooctonate aldolaseUniRule annotation (EC:2.5.1.55UniRule annotation)
Alternative name(s):
3-deoxy-D-manno-octulosonic acid 8-phosphate synthaseUniRule annotation
KDO-8-phosphate synthaseUniRule annotation
Short name:
KDO 8-P synthaseUniRule annotation
Short name:
KDOPSUniRule annotation
Phospho-2-dehydro-3-deoxyoctonate aldolaseUniRule annotation
Gene namesi
Name:kdsAUniRule annotation
Ordered Locus Names:VIBHAR_01254
OrganismiVibrio campbellii (strain ATCC BAA-1116 / BB120)
Taxonomic identifieri338187 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000008152: Chromosome I

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 2832832-dehydro-3-deoxyphosphooctonate aldolasePRO_1000003351Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi338187.VIBHAR_01254.

Structurei

3D structure databases

ProteinModelPortaliA7MY69.
SMRiA7MY69. Positions 1-281.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the KdsA family.UniRule annotation

Phylogenomic databases

eggNOGiCOG2877.
HOGENOMiHOG000023021.
KOiK01627.
OrthoDBiEOG680X4R.

Family and domain databases

Gene3Di3.20.20.70. 1 hit.
HAMAPiMF_00056. KDO8P_synth.
InterProiIPR013785. Aldolase_TIM.
IPR006218. DAHP1/KDSA.
IPR006269. KDO8P_synthase.
[Graphical view]
PANTHERiPTHR21057:SF2. PTHR21057:SF2. 1 hit.
PfamiPF00793. DAHP_synth_1. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01362. KDO8P_synth. 1 hit.

Sequencei

Sequence statusi: Complete.

A7MY69-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MEQKIVNIGD IQVANDKPFT LFAGMNVLES RDLAMQICEH YVKVTDKLGI
60 70 80 90 100
PYVFKASFDK ANRSSVHSYR GPGLEEGMKI FQELKDTFGV KIITDVHTEA
110 120 130 140 150
QAQPVADVVD VIQLPAFLAR QTDLVEAMAK TGAVINVKKP QFMSPGQVGN
160 170 180 190 200
IVEKFAECGN ENIILCERGS CMGYDNLVVD MLGFGVMKNA SKGSPIIFDV
210 220 230 240 250
THSLQMRDPS GAASGGRREQ TVELAKAGLA TGIAGLFIEA HPNPDQARCD
260 270 280
GPSALPLDKL EPFLAQMKSL DDLIKSFADI DIK
Length:283
Mass (Da):30,746
Last modified:October 2, 2007 - v1
Checksum:i6464EAE8610FA32F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000789 Genomic DNA. Translation: ABU70233.1.
RefSeqiWP_012127204.1. NC_022269.1.
YP_001444460.1. NC_009783.1.
YP_008526119.1. NC_022269.1.

Genome annotation databases

EnsemblBacteriaiABU70233; ABU70233; VIBHAR_01254.
GeneIDi16815518.
5554491.
KEGGivca:M892_06740.
vha:VIBHAR_01254.
PATRICi20129338. VBIVibHar24526_1219.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000789 Genomic DNA. Translation: ABU70233.1 .
RefSeqi WP_012127204.1. NC_022269.1.
YP_001444460.1. NC_009783.1.
YP_008526119.1. NC_022269.1.

3D structure databases

ProteinModelPortali A7MY69.
SMRi A7MY69. Positions 1-281.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 338187.VIBHAR_01254.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABU70233 ; ABU70233 ; VIBHAR_01254 .
GeneIDi 16815518.
5554491.
KEGGi vca:M892_06740.
vha:VIBHAR_01254.
PATRICi 20129338. VBIVibHar24526_1219.

Phylogenomic databases

eggNOGi COG2877.
HOGENOMi HOG000023021.
KOi K01627.
OrthoDBi EOG680X4R.

Enzyme and pathway databases

UniPathwayi UPA00030 .
UPA00357 ; UER00474 .
BioCyci VHAR338187:GJCH-1244-MONOMER.

Family and domain databases

Gene3Di 3.20.20.70. 1 hit.
HAMAPi MF_00056. KDO8P_synth.
InterProi IPR013785. Aldolase_TIM.
IPR006218. DAHP1/KDSA.
IPR006269. KDO8P_synthase.
[Graphical view ]
PANTHERi PTHR21057:SF2. PTHR21057:SF2. 1 hit.
Pfami PF00793. DAHP_synth_1. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR01362. KDO8P_synth. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-1116 / BB120.

Entry informationi

Entry nameiKDSA_VIBCB
AccessioniPrimary (citable) accession number: A7MY69
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: October 2, 2007
Last modified: October 29, 2014
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3