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Protein

Endonuclease 8

Gene

nei

Organism
Cronobacter sakazakii (strain ATCC BAA-894) (Enterobacter sakazakii)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine. Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.UniRule annotation

Catalytic activityi

The C-O-P bond 3' to the apurinic or apyrimidinic site in DNA is broken by a beta-elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate.UniRule annotation

Cofactori

Zn2+UniRule annotationNote: Binds 1 zinc ion per subunit.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei2Schiff-base intermediate with DNAUniRule annotation1
Active sitei3Proton donorUniRule annotation1
Active sitei53Proton donor; for beta-elimination activityUniRule annotation1
Binding sitei70DNAUniRule annotation1
Binding sitei125DNAUniRule annotation1
Binding sitei169DNAUniRule annotation1
Active sitei253Proton donor; for delta-elimination activityUniRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri229 – 263FPG-typeUniRule annotationAdd BLAST35

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding, Glycosidase, Hydrolase, Lyase, Multifunctional enzyme
Biological processDNA damage, DNA repair
LigandMetal-binding, Zinc

Enzyme and pathway databases

BioCyciCSAK290339:G1G9O-2500-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Endonuclease 8UniRule annotation
Alternative name(s):
DNA glycosylase/AP lyase NeiUniRule annotation (EC:3.2.2.-UniRule annotation, EC:4.2.99.18UniRule annotation)
DNA-(apurinic or apyrimidinic site) lyase NeiUniRule annotation
Endonuclease VIIIUniRule annotation
Gene namesi
Name:neiUniRule annotation
Ordered Locus Names:ESA_02628
OrganismiCronobacter sakazakii (strain ATCC BAA-894) (Enterobacter sakazakii)
Taxonomic identifieri290339 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeCronobacter
Proteomesi
  • UP000000260 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedUniRule annotation
ChainiPRO_10000672052 – 263Endonuclease 8Add BLAST262

Interactioni

Protein-protein interaction databases

STRINGi290339.ESA_02628

Structurei

3D structure databases

ProteinModelPortaliA7MQW6
SMRiA7MQW6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the FPG family.UniRule annotation

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri229 – 263FPG-typeUniRule annotationAdd BLAST35

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiENOG4108S0J Bacteria
COG0266 LUCA
HOGENOMiHOG000020882
KOiK05522
OMAiEILWQAQ

Family and domain databases

Gene3Di3.20.190.10, 1 hit
HAMAPiMF_01253 Endonuclease_8, 1 hit
InterProiView protein in InterPro
IPR015886 DNA_glyclase/AP_lyase_DNA-bd
IPR015887 DNA_glyclase_Znf_dom_DNA_BS
IPR023713 Endonuclease-VIII
IPR012319 FPG_cat
IPR035937 MutM-like_N-ter
IPR010979 Ribosomal_S13-like_H2TH
IPR000214 Znf_DNA_glyclase/AP_lyase
IPR010663 Znf_FPG/IleRS
PfamiView protein in Pfam
PF01149 Fapy_DNA_glyco, 1 hit
PF06831 H2TH, 1 hit
PF06827 zf-FPG_IleRS, 1 hit
SMARTiView protein in SMART
SM00898 Fapy_DNA_glyco, 1 hit
SM01232 H2TH, 1 hit
SUPFAMiSSF46946 SSF46946, 1 hit
SSF81624 SSF81624, 1 hit
PROSITEiView protein in PROSITE
PS51068 FPG_CAT, 1 hit
PS01242 ZF_FPG_1, 1 hit
PS51066 ZF_FPG_2, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A7MQW6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPEGPEIRRA ADKLEAAVAG KPLTHVWFAF PELKAFEAQL TGARVERFET
60 70 80 90 100
RGKALLTHFS CGLTLYSHNQ LYGVWRVVKA GETPQTTRSL RVRLETEDAA
110 120 130 140 150
VLLYSASEIE MLDADGVAAH AFLQRVGPDV LDMSLTVEQV KERLLSPRFH
160 170 180 190 200
RRQFSGLLLD QAFLAGLGNY LRVEILWQAQ LAPRHKAIEL NNTQLDALAR
210 220 230 240 250
ACLEIPRLSY QTRGTVDENK HHGALFRFEV FHRAGKKCRR CGGIIEKTTL
260
SSRPFYWCPG CQA
Length:263
Mass (Da):29,643
Last modified:October 2, 2007 - v1
Checksum:iA9FE30B0E0F20226
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000783 Genomic DNA Translation: ABU77868.1
RefSeqiWP_012125337.1, NC_009778.1

Genome annotation databases

EnsemblBacteriaiABU77868; ABU77868; ESA_02628
KEGGiesa:ESA_02628
PATRICifig|290339.8.peg.2339

Similar proteinsi

Entry informationi

Entry nameiEND8_CROS8
AccessioniPrimary (citable) accession number: A7MQW6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: October 2, 2007
Last modified: May 23, 2018
This is version 63 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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