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Protein

HTH-type transcriptional activator RhaR

Gene

rhaR

Organism
Cronobacter sakazakii (strain ATCC BAA-894) (Enterobacter sakazakii)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Activates expression of the rhaSR operon in response to L-rhamnose.UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi195 – 214H-T-H motifUniRule annotationAdd BLAST20
DNA bindingi244 – 267H-T-H motifUniRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionActivator, DNA-binding
Biological processRhamnose metabolism, Transcription, Transcription regulation

Enzyme and pathway databases

BioCyciCSAK290339:G1G9O-3675-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
HTH-type transcriptional activator RhaRUniRule annotation
Alternative name(s):
L-rhamnose operon transcriptional activator RhaRUniRule annotation
Gene namesi
Name:rhaRUniRule annotation
Ordered Locus Names:ESA_03845
OrganismiCronobacter sakazakii (strain ATCC BAA-894) (Enterobacter sakazakii)
Taxonomic identifieri290339 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeCronobacter
Proteomesi
  • UP000000260 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003168941 – 283HTH-type transcriptional activator RhaRAdd BLAST283

Proteomic databases

PRIDEiA7ML57

Interactioni

Subunit structurei

Binds DNA as a dimer.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sitei246Interaction with sigma-70UniRule annotation1

Protein-protein interaction databases

STRINGi290339.ESA_03845

Structurei

3D structure databases

ProteinModelPortaliA7ML57
SMRiA7ML57
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG4108BRW Bacteria
ENOG410XYX0 LUCA
HOGENOMiHOG000290513
KOiK02854
OMAiNREVGMT

Family and domain databases

Gene3Di2.60.120.10, 1 hit
HAMAPiMF_01533 HTH_type_RhaR, 1 hit
InterProiView protein in InterPro
IPR003313 AraC-bd
IPR009057 Homeobox-like_sf
IPR037923 HTH-like
IPR018060 HTH_AraC
IPR018062 HTH_AraC-typ_CS
IPR014710 RmlC-like_jellyroll
IPR023699 Tscrpt_act_RhaR
IPR020449 Tscrpt_reg_HTH_AraC-type
PfamiView protein in Pfam
PF02311 AraC_binding, 1 hit
PF12833 HTH_18, 1 hit
PRINTSiPR00032 HTHARAC
SMARTiView protein in SMART
SM00342 HTH_ARAC, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
SSF51215 SSF51215, 1 hit
PROSITEiView protein in PROSITE
PS00041 HTH_ARAC_FAMILY_1, 1 hit
PS01124 HTH_ARAC_FAMILY_2, 1 hit

Sequencei

Sequence statusi: Complete.

A7ML57-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASQLVLRKA DFFATPTQPV VVADRYPQNV FAEHTHEFCE LVLVWRGNGL
60 70 80 90 100
HVLNDRPYRI TCGDLFYIRA EDRHSYQSVN DLVLHNIIYC PERLQLNVNW
110 120 130 140 150
RDLLENPRGV NGDPRWRLSS QGMVQARQVI DQLEHESPKQ DALSHCLAES
160 170 180 190 200
LFLQLAITLR RHRYQPSGGT GPGEGETLDL LMAALGNSLD VPFDLQHFCS
210 220 230 240 250
HYQIAERPLR QLFRQQTGMT ISQYLRQLRI CQAQYLLRHS SLLISEIAAR
260 270 280
CGFEDSNYFS VVFTRETGVT PRVWRQQWGA LAG
Length:283
Mass (Da):32,577
Last modified:October 2, 2007 - v1
Checksum:i44CD346A53D9E7C3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000783 Genomic DNA Translation: ABU79031.1
RefSeqiWP_012126093.1, NC_009778.1

Genome annotation databases

EnsemblBacteriaiABU79031; ABU79031; ESA_03845
KEGGiesa:ESA_03845
PATRICifig|290339.8.peg.3417

Similar proteinsi

Entry informationi

Entry nameiRHAR_CROS8
AccessioniPrimary (citable) accession number: A7ML57
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: October 2, 2007
Last modified: March 28, 2018
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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