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A7LPD8

- A7LPD8_CAEEL

UniProt

A7LPD8 - A7LPD8_CAEEL

Protein
Submitted name:

Protein HDA-6, isoform c

Gene

hda-6

Organism
Caenorhabditis elegans
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 56 (01 Oct 2014)
      Sequence version 1 (11 Sep 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. protein deacetylase activity Source: WormBase
    2. zinc ion binding Source: InterPro

    GO - Biological processi

    1. protein deacetylation Source: GOC

    Keywords - Molecular functioni

    HydrolaseSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein HDA-6, isoform cImported
    Gene namesi
    Name:hda-6Imported
    ORF Names:CELE_F41H10.6Imported, F41H10.6Imported
    OrganismiCaenorhabditis elegansImported
    Taxonomic identifieri6239 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
    ProteomesiUP000001940: Chromosome IV

    Organism-specific databases

    WormBaseiF41H10.6c; CE41132; WBGene00018319; hda-6.

    Structurei

    3D structure databases

    ProteinModelPortaliA7LPD8.
    SMRiA7LPD8. Positions 33-395, 444-818, 853-956.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00530000062809.
    HOGENOMiHOG000004769.
    InParanoidiA7LPD8.
    KOiK11407.
    OMAiLQENWVC.
    OrthoDBiEOG7992PT.
    PhylomeDBiA7LPD8.

    Family and domain databases

    Gene3Di3.30.40.10. 1 hit.
    3.40.800.20. 2 hits.
    InterProiIPR000286. His_deacetylse.
    IPR023801. His_deacetylse_dom.
    IPR013083. Znf_RING/FYVE/PHD.
    IPR001607. Znf_UBP.
    [Graphical view]
    PANTHERiPTHR10625. PTHR10625. 1 hit.
    PfamiPF00850. Hist_deacetyl. 2 hits.
    PF02148. zf-UBP. 1 hit.
    [Graphical view]
    PRINTSiPR01270. HDASUPER.
    PROSITEiPS50271. ZF_UBP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A7LPD8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLFEDRQKNR STGPTLIGFN QTQNEHENTV CPTHPESSDR ILKIKEALTK    50
    TKILEKCTVL TNFLEIDDAD LEVTHDKSMV KDLMESEKKT QEDINSQCEK 100
    YDSVFMTEFQ NSMKVAKDGV ACVRDLTNRI MANEASNGFA VVRPPGHHAD 150
    SVSPCGFCLF NNVAQAAEEA FFSGAERILI VDLDVHHGHG TQRIFYDDKR 200
    VLYFSIHRHE HGLFWPHLPE SDFDHIGSGK GLGYNANLAL NETGCTDSDY 250
    LSIIFHVLLP LATQFDPHFV IISAGFDALL GDPLGGMCLT PDGYSHILYH 300
    LKSLAQGRML VVLEGGYNHQ ISAVAVQRCV RVLLGYAPFS IELNEAPKES 350
    TVDSCVSLVS VLRHHWNCFD YFPSRTSLRL AQWPIVNTKV IYNYDPTTRR 400
    ADTGEIIQDE LASTEFTASD VIPTENMETL IYFNEGDDAH FDLEEDNHPE 450
    KPARTRRILK TLRESGVLEK CVDRNCERIA TNEEIRLVHT KKMLEHLRTT 500
    ETMKDEELME EAEKEFNSIY LTRDTLKVAR KAVGAVLQSV DEIFEKDAGQ 550
    RNALVIVRPP GHHASASKSS GFCIFNNVAV AAKYAQRRHK AKRVLILDWD 600
    VHHGNGTQEI FYEDSNVMYM SIHRHDKGNF YPIGEPKDYS DVGEGAGEGM 650
    SVNVPFSGVQ MGDNEYQMAF QRVIMPIAYQ FNPDLVLISA GFDAAVDDPL 700
    GEYKVTPETF ALMTYQLSSL AGGRIITVLE GGYNLTSISN SAQAVCEVLQ 750
    NRSMLRRLRE EKEQFATKPQ KIESSCIKTI REVCAVQQKY WSILKGFQVT 800
    PSNYGLDIDD EAYDDDSIDM ADQSSSSGSS SSSTRPSHNL EIMDSGPAHA 850
    VVPLATCPHL KEVKPLPPAK INARTACSEC QIGAEVWTCL TCYKYNCGRF 900
    VNEHAMMHHL SSSHPMALSM ADLSVWCYPC DSYVHNPALI GAKSAAHESK 950
    FGETMPS 957
    Length:957
    Mass (Da):107,024
    Last modified:September 11, 2007 - v1
    Checksum:iC2D025AFB4920FD2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FO081367 Genomic DNA. Translation: CCD71106.1.
    RefSeqiNP_001122780.1. NM_001129308.2.
    UniGeneiCel.12964.

    Genome annotation databases

    EnsemblMetazoaiF41H10.6c; F41H10.6c; WBGene00018319.
    GeneIDi177316.
    KEGGicel:CELE_F41H10.6.
    UCSCiF41H10.6c. c. elegans.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FO081367 Genomic DNA. Translation: CCD71106.1 .
    RefSeqi NP_001122780.1. NM_001129308.2.
    UniGenei Cel.12964.

    3D structure databases

    ProteinModelPortali A7LPD8.
    SMRi A7LPD8. Positions 33-395, 444-818, 853-956.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblMetazoai F41H10.6c ; F41H10.6c ; WBGene00018319 .
    GeneIDi 177316.
    KEGGi cel:CELE_F41H10.6.
    UCSCi F41H10.6c. c. elegans.

    Organism-specific databases

    CTDi 177316.
    WormBasei F41H10.6c ; CE41132 ; WBGene00018319 ; hda-6.

    Phylogenomic databases

    GeneTreei ENSGT00530000062809.
    HOGENOMi HOG000004769.
    InParanoidi A7LPD8.
    KOi K11407.
    OMAi LQENWVC.
    OrthoDBi EOG7992PT.
    PhylomeDBi A7LPD8.

    Miscellaneous databases

    NextBioi 896234.
    PROi A7LPD8.

    Family and domain databases

    Gene3Di 3.30.40.10. 1 hit.
    3.40.800.20. 2 hits.
    InterProi IPR000286. His_deacetylse.
    IPR023801. His_deacetylse_dom.
    IPR013083. Znf_RING/FYVE/PHD.
    IPR001607. Znf_UBP.
    [Graphical view ]
    PANTHERi PTHR10625. PTHR10625. 1 hit.
    Pfami PF00850. Hist_deacetyl. 2 hits.
    PF02148. zf-UBP. 1 hit.
    [Graphical view ]
    PRINTSi PR01270. HDASUPER.
    PROSITEi PS50271. ZF_UBP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
      The C. elegans sequencing consortium
      Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Bristol N2Imported.

    Entry informationi

    Entry nameiA7LPD8_CAEEL
    AccessioniPrimary (citable) accession number: A7LPD8
    Entry historyi
    Integrated into UniProtKB/TrEMBL: September 11, 2007
    Last sequence update: September 11, 2007
    Last modified: October 1, 2014
    This is version 56 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3