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A7LPD8

- A7LPD8_CAEEL

UniProt

A7LPD8 - A7LPD8_CAEEL

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Protein
Submitted name:

Protein HDA-6, isoform c

Gene

hda-6

Organism
Caenorhabditis elegans
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. protein deacetylase activity Source: WormBase
  2. zinc ion binding Source: InterPro

GO - Biological processi

  1. protein deacetylation Source: GOC
Complete GO annotation...

Keywords - Molecular functioni

HydrolaseSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Protein HDA-6, isoform cImported
Gene namesi
Name:hda-6Imported
ORF Names:CELE_F41H10.6Imported, F41H10.6Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
ProteomesiUP000001940: Chromosome IV

Organism-specific databases

WormBaseiF41H10.6c; CE41132; WBGene00018319; hda-6.

Expressioni

Gene expression databases

ExpressionAtlasiA7LPD8. baseline.

Structurei

3D structure databases

ProteinModelPortaliA7LPD8.
SMRiA7LPD8. Positions 33-395, 444-818, 853-956.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00530000062809.
HOGENOMiHOG000004769.
KOiK11407.
OMAiLQENWVC.
OrthoDBiEOG7992PT.
PhylomeDBiA7LPD8.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
3.40.800.20. 2 hits.
InterProiIPR000286. His_deacetylse.
IPR023801. His_deacetylse_dom.
IPR013083. Znf_RING/FYVE/PHD.
IPR001607. Znf_UBP.
[Graphical view]
PANTHERiPTHR10625. PTHR10625. 1 hit.
PfamiPF00850. Hist_deacetyl. 2 hits.
PF02148. zf-UBP. 1 hit.
[Graphical view]
PRINTSiPR01270. HDASUPER.
PROSITEiPS50271. ZF_UBP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A7LPD8-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MLFEDRQKNR STGPTLIGFN QTQNEHENTV CPTHPESSDR ILKIKEALTK
60 70 80 90 100
TKILEKCTVL TNFLEIDDAD LEVTHDKSMV KDLMESEKKT QEDINSQCEK
110 120 130 140 150
YDSVFMTEFQ NSMKVAKDGV ACVRDLTNRI MANEASNGFA VVRPPGHHAD
160 170 180 190 200
SVSPCGFCLF NNVAQAAEEA FFSGAERILI VDLDVHHGHG TQRIFYDDKR
210 220 230 240 250
VLYFSIHRHE HGLFWPHLPE SDFDHIGSGK GLGYNANLAL NETGCTDSDY
260 270 280 290 300
LSIIFHVLLP LATQFDPHFV IISAGFDALL GDPLGGMCLT PDGYSHILYH
310 320 330 340 350
LKSLAQGRML VVLEGGYNHQ ISAVAVQRCV RVLLGYAPFS IELNEAPKES
360 370 380 390 400
TVDSCVSLVS VLRHHWNCFD YFPSRTSLRL AQWPIVNTKV IYNYDPTTRR
410 420 430 440 450
ADTGEIIQDE LASTEFTASD VIPTENMETL IYFNEGDDAH FDLEEDNHPE
460 470 480 490 500
KPARTRRILK TLRESGVLEK CVDRNCERIA TNEEIRLVHT KKMLEHLRTT
510 520 530 540 550
ETMKDEELME EAEKEFNSIY LTRDTLKVAR KAVGAVLQSV DEIFEKDAGQ
560 570 580 590 600
RNALVIVRPP GHHASASKSS GFCIFNNVAV AAKYAQRRHK AKRVLILDWD
610 620 630 640 650
VHHGNGTQEI FYEDSNVMYM SIHRHDKGNF YPIGEPKDYS DVGEGAGEGM
660 670 680 690 700
SVNVPFSGVQ MGDNEYQMAF QRVIMPIAYQ FNPDLVLISA GFDAAVDDPL
710 720 730 740 750
GEYKVTPETF ALMTYQLSSL AGGRIITVLE GGYNLTSISN SAQAVCEVLQ
760 770 780 790 800
NRSMLRRLRE EKEQFATKPQ KIESSCIKTI REVCAVQQKY WSILKGFQVT
810 820 830 840 850
PSNYGLDIDD EAYDDDSIDM ADQSSSSGSS SSSTRPSHNL EIMDSGPAHA
860 870 880 890 900
VVPLATCPHL KEVKPLPPAK INARTACSEC QIGAEVWTCL TCYKYNCGRF
910 920 930 940 950
VNEHAMMHHL SSSHPMALSM ADLSVWCYPC DSYVHNPALI GAKSAAHESK

FGETMPS
Length:957
Mass (Da):107,024
Last modified:September 11, 2007 - v1
Checksum:iC2D025AFB4920FD2
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FO081367 Genomic DNA. Translation: CCD71106.1.
RefSeqiNP_001122780.1. NM_001129308.2.
UniGeneiCel.12964.

Genome annotation databases

EnsemblMetazoaiF41H10.6c; F41H10.6c; WBGene00018319.
GeneIDi177316.
KEGGicel:CELE_F41H10.6.
UCSCiF41H10.6c. c. elegans.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FO081367 Genomic DNA. Translation: CCD71106.1 .
RefSeqi NP_001122780.1. NM_001129308.2.
UniGenei Cel.12964.

3D structure databases

ProteinModelPortali A7LPD8.
SMRi A7LPD8. Positions 33-395, 444-818, 853-956.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblMetazoai F41H10.6c ; F41H10.6c ; WBGene00018319 .
GeneIDi 177316.
KEGGi cel:CELE_F41H10.6.
UCSCi F41H10.6c. c. elegans.

Organism-specific databases

CTDi 177316.
WormBasei F41H10.6c ; CE41132 ; WBGene00018319 ; hda-6.

Phylogenomic databases

GeneTreei ENSGT00530000062809.
HOGENOMi HOG000004769.
KOi K11407.
OMAi LQENWVC.
OrthoDBi EOG7992PT.
PhylomeDBi A7LPD8.

Miscellaneous databases

NextBioi 896234.
PROi A7LPD8.

Gene expression databases

ExpressionAtlasi A7LPD8. baseline.

Family and domain databases

Gene3Di 3.30.40.10. 1 hit.
3.40.800.20. 2 hits.
InterProi IPR000286. His_deacetylse.
IPR023801. His_deacetylse_dom.
IPR013083. Znf_RING/FYVE/PHD.
IPR001607. Znf_UBP.
[Graphical view ]
PANTHERi PTHR10625. PTHR10625. 1 hit.
Pfami PF00850. Hist_deacetyl. 2 hits.
PF02148. zf-UBP. 1 hit.
[Graphical view ]
PRINTSi PR01270. HDASUPER.
PROSITEi PS50271. ZF_UBP. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of the nematode C. elegans: a platform for investigating biology."
    The C. elegans sequencing consortium
    Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Bristol N2Imported.

Entry informationi

Entry nameiA7LPD8_CAEEL
AccessioniPrimary (citable) accession number: A7LPD8
Entry historyi
Integrated into UniProtKB/TrEMBL: September 11, 2007
Last sequence update: September 11, 2007
Last modified: October 29, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3