A7LPD8 (A7LPD8_CAEEL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Protein HDA-6, isoform c EMBL CCD71106.1

Gene names

Name:	hda-6 EMBL CCD71106.1 WormBase F41H10.6c
Synonyms:	hdac-6 WormBase F41H10.6c
ORF Names:	CELE_F41H10.6 EMBL CCD71106.1, F41H10.6 WormBase WBGene00018319

Organism

Caenorhabditis elegans [Reference proteome] EMBL CCD71106.1

Taxonomic identifier

6239 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Protostomia › Ecdysozoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis

Protein attributes

Sequence length	957 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular_function	protein deacetylase activity Inferred from sequence or structural similarity PubMed 16525063. Source: WormBase zinc ion binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A7LPD8 [UniParc]. Last modified September 11, 2007. Version 1. Checksum: C2D025AFB4920FD2	FASTA	957	107,024
	10 20 30 40 50 60 MLFEDRQKNR STGPTLIGFN QTQNEHENTV CPTHPESSDR ILKIKEALTK TKILEKCTVL 70 80 90 100 110 120 TNFLEIDDAD LEVTHDKSMV KDLMESEKKT QEDINSQCEK YDSVFMTEFQ NSMKVAKDGV 130 140 150 160 170 180 ACVRDLTNRI MANEASNGFA VVRPPGHHAD SVSPCGFCLF NNVAQAAEEA FFSGAERILI 190 200 210 220 230 240 VDLDVHHGHG TQRIFYDDKR VLYFSIHRHE HGLFWPHLPE SDFDHIGSGK GLGYNANLAL 250 260 270 280 290 300 NETGCTDSDY LSIIFHVLLP LATQFDPHFV IISAGFDALL GDPLGGMCLT PDGYSHILYH 310 320 330 340 350 360 LKSLAQGRML VVLEGGYNHQ ISAVAVQRCV RVLLGYAPFS IELNEAPKES TVDSCVSLVS 370 380 390 400 410 420 VLRHHWNCFD YFPSRTSLRL AQWPIVNTKV IYNYDPTTRR ADTGEIIQDE LASTEFTASD 430 440 450 460 470 480 VIPTENMETL IYFNEGDDAH FDLEEDNHPE KPARTRRILK TLRESGVLEK CVDRNCERIA 490 500 510 520 530 540 TNEEIRLVHT KKMLEHLRTT ETMKDEELME EAEKEFNSIY LTRDTLKVAR KAVGAVLQSV 550 560 570 580 590 600 DEIFEKDAGQ RNALVIVRPP GHHASASKSS GFCIFNNVAV AAKYAQRRHK AKRVLILDWD 610 620 630 640 650 660 VHHGNGTQEI FYEDSNVMYM SIHRHDKGNF YPIGEPKDYS DVGEGAGEGM SVNVPFSGVQ 670 680 690 700 710 720 MGDNEYQMAF QRVIMPIAYQ FNPDLVLISA GFDAAVDDPL GEYKVTPETF ALMTYQLSSL 730 740 750 760 770 780 AGGRIITVLE GGYNLTSISN SAQAVCEVLQ NRSMLRRLRE EKEQFATKPQ KIESSCIKTI 790 800 810 820 830 840 REVCAVQQKY WSILKGFQVT PSNYGLDIDD EAYDDDSIDM ADQSSSSGSS SSSTRPSHNL 850 860 870 880 890 900 EIMDSGPAHA VVPLATCPHL KEVKPLPPAK INARTACSEC QIGAEVWTCL TCYKYNCGRF 910 920 930 940 950 VNEHAMMHHL SSSHPMALSM ADLSVWCYPC DSYVHNPALI GAKSAAHESK FGETMPS

References

[1]	"Genome sequence of the nematode C. elegans: a platform for investigating biology." Caenorhabditis elegans Sequencing Consortium Science 282:2012-2018(1998) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Bristol N2 EMBL CCD71106.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	FO081367 Genomic DNA. Translation: CCD71106.1.
RefSeq	NP_001122780.1. NM_001129308.2.
UniGene	Cel.12964.
3D structure databases
ProteinModelPortal	A7LPD8.
SMR	A7LPD8. Positions 33-369, 444-795, 853-956.
ModBase	Search...
Protein-protein interaction databases
STRING	A7LPD8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblMetazoa	F41H10.6c; F41H10.6c; F41H10.6.
GeneID	177316.
KEGG	cel:CELE_F41H10.6.
UCSC	F41H10.6c. c. elegans.
Organism-specific databases
CTD	177316.
WormBase	F41H10.6c; CE41132; WBGene00018319; hda-6.
Phylogenomic databases
GeneTree	ENSGT00530000062809.
HOGENOM	HOG000004769.
InParanoid	A7LPD8.
KO	K11407.
OMA	LQENWVC.
Gene expression databases
ArrayExpress	A7LPD8.
Family and domain databases
Gene3D	3.30.40.10. 1 hit. 3.40.800.20. 2 hits.
InterPro	IPR000286. His_deacetylse. IPR023801. His_deacetylse_dom. IPR013083. Znf_RING/FYVE/PHD. IPR001607. Znf_UBP. [Graphical view]
PANTHER	PTHR10625. PTHR10625. 1 hit.
Pfam	PF00850. Hist_deacetyl. 2 hits. PF02148. zf-UBP. 1 hit. [Graphical view]
PRINTS	PR01270. HDASUPER.
PROSITE	PS50271. ZF_UBP. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	896234.

Entry information

Entry name

A7LPD8_CAEEL

Accession

Primary (citable) accession number: A7LPD8

Entry history

Integrated into UniProtKB/TrEMBL:	September 11, 2007
Last sequence update:	September 11, 2007
Last modified:	May 1, 2013
This is version 46 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)