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Protein
Submitted name:

Transient receptor potential cation channel subfamily M member 5

Gene

Trpm5

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionReceptorImported

Names & Taxonomyi

Protein namesi
Submitted name:
Transient receptor potential cation channel subfamily M member 5Imported
Gene namesi
Name:Trpm5Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei30 – 52HelicalSequence analysisAdd BLAST23

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PaxDbiA7L640.

Expressioni

Gene expression databases

BgeeiENSRNOG00000020484.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000039981.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG3614. Eukaryota.
ENOG410XR5B. LUCA.
HOGENOMiHOG000236350.

Family and domain databases

InterProiView protein in InterPro
IPR029577. TRPM5.
PANTHERiPTHR13800:SF18. PTHR13800:SF18. 1 hit.

Sequencei

Sequence statusi: Fragment.

A7L640-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
VFTLRLIHIF AIHKQLGPKI IIVERMMKDV FFFLFFLSVW LVAYGVTTQA
60 70 80 90 100
LLHPHDGRLE WIFRRVLYRP YLQIFGQIPL DEIDEARVNC SLHPLLLDSS
110
ASCPNLYANW
Length:110
Mass (Da):12,957
Last modified:September 11, 2007 - v1
Checksum:i824E6E439934DC58
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1
Non-terminal residuei110Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF673692 mRNA. Translation: ABS12240.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
EF673692 mRNA. Translation: ABS12240.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000039981.

Proteomic databases

PaxDbiA7L640.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

eggNOGiKOG3614. Eukaryota.
ENOG410XR5B. LUCA.
HOGENOMiHOG000236350.

Gene expression databases

BgeeiENSRNOG00000020484.

Family and domain databases

InterProiView protein in InterPro
IPR029577. TRPM5.
PANTHERiPTHR13800:SF18. PTHR13800:SF18. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiA7L640_RAT
AccessioniPrimary (citable) accession number: A7L640
Entry historyiIntegrated into UniProtKB/TrEMBL: September 11, 2007
Last sequence update: September 11, 2007
Last modified: February 15, 2017
This is version 40 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.