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Protein

Glycine--tRNA ligase beta subunit

Gene

glyS

Organism
Vibrio sp. (strain Ex25)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly).UniRule annotationSAAS annotation

GO - Molecular functioni

  1. arginine-tRNA ligase activity Source: InterPro
  2. ATP binding Source: UniProtKB-HAMAP
  3. glycine-tRNA ligase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. arginyl-tRNA aminoacylation Source: InterPro
  2. glycyl-tRNA aminoacylation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Aminoacyl-tRNA synthetaseUniRule annotationSAAS annotation, Ligase

Keywords - Biological processi

Protein biosynthesisUniRule annotationSAAS annotation

Keywords - Ligandi

ATP-bindingUniRule annotationSAAS annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciVSP150340:GJJG-403-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Glycine--tRNA ligase beta subunitUniRule annotationSAAS annotation (EC:6.1.1.14UniRule annotationSAAS annotation)
Alternative name(s):
Glycyl-tRNA synthetase beta subunitUniRule annotation
Gene namesi
Name:glySUniRule annotationImported
Ordered Locus Names:VEA_002000Imported
ORF Names:VEx25_0007Imported
OrganismiVibrio sp. (strain Ex25)Imported
Taxonomic identifieri150340 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000002571 Componenti: Chromosome 1

Subcellular locationi

  1. Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Tetramer of two alpha and two beta subunits.UniRule annotationSAAS annotation

Protein-protein interaction databases

STRINGi150340.VEA_002000.

Family & Domainsi

Sequence similaritiesi

Belongs to the class-II aminoacyl-tRNA synthetase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0751.
HOGENOMiHOG000264302.
KOiK01879.
OMAiFARPIRW.
OrthoDBiEOG661H9S.

Family and domain databases

Gene3Di1.10.730.10. 1 hit.
HAMAPiMF_00255. Gly_tRNA_synth_beta.
InterProiIPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
IPR009080. tRNAsynth_1a_anticodon-bd.
[Graphical view]
PfamiPF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
[Graphical view]
PRINTSiPR01045. TRNASYNTHGB.
SMARTiSM00836. DALR_1. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00211. glyS. 1 hit.
PROSITEiPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A7K5X5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKEFLIELG TEELPPTQLR TLAEAFAANF EAELKSAELA HEGVKWFAAP
60 70 80 90 100
RRLALKVAAL AESQSDKIVE KRGPAVSAAF DAEGNPTKAA QGWARGCGIS
110 120 130 140 150
VDQAERMVTD KGEWLLFKQE VKGQPTSEIV VELAAKALAN LPIAKPMRWG
160 170 180 190 200
NKTTQFIRPV KTLTMLMGSD LIEGEILGVA SDRTIRGHRF MGEQEFTIDS
210 220 230 240 250
AEQYPAILEE RGKVMADYEA RKAIILADAQ KAAAAVGGIA DLEDDLVEEV
260 270 280 290 300
TSLVEWPVVL TAKFEEEFLK VPSEALVYTM KGDQKYFPVY DENKKLLPNF
310 320 330 340 350
IFVSNIESKE PRYVIEGNEK VVRPRLADAE FFFNTDRKRP LIDRLPELEQ
360 370 380 390 400
AIFQKQLGTI KDKTDRITEL AGYIAEQIGA DVEKSKRAGL LAKCDLMTSM
410 420 430 440 450
VFEFTDTQGV MGMHYARHDG EAEEVAVALN EQYMPRFAGD ELPSNGVSTA
460 470 480 490 500
VAMADKLDTI VGIFGIGQAP KGSDPFALRR ASLGVLRIIV EYGYNLDLVD
510 520 530 540 550
LVAKAKSLFV DRLTNDNVEQ DVIEFMLGRF RAWYQDEGFS VDIIQAVLAR
560 570 580 590 600
RPTKPADFDQ RVKAVSHFRE LEAAESLAAA NKRVGNILAK FDGELAADID
610 620 630 640 650
LALLQEDAEK ALAESVEVMT EALEPAFATG NYQEALSKLA DLREPVDAFF
660 670 680
DNVMVMADDE ALKKNRLTLL NNLRNLFLQV ADISVLQK
Length:688
Mass (Da):76,213
Last modified:September 11, 2007 - v1
Checksum:i2B0FC1B2B5314413
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001805 Genomic DNA. Translation: ACY50163.1.
DS267854 Genomic DNA. Translation: EDN56007.1.
RefSeqiWP_006743180.1. NZ_DS267854.1.
YP_003284628.1. NC_013456.1.

Genome annotation databases

EnsemblBacteriaiACY50163; ACY50163; VEA_002000.
EDN56007; EDN56007; VEx25_0007.
KEGGivex:VEA_002000.
PATRICi28405270. VBIVibSp2903_3997.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001805 Genomic DNA. Translation: ACY50163.1.
DS267854 Genomic DNA. Translation: EDN56007.1.
RefSeqiWP_006743180.1. NZ_DS267854.1.
YP_003284628.1. NC_013456.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi150340.VEA_002000.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiACY50163; ACY50163; VEA_002000.
EDN56007; EDN56007; VEx25_0007.
KEGGivex:VEA_002000.
PATRICi28405270. VBIVibSp2903_3997.

Phylogenomic databases

eggNOGiCOG0751.
HOGENOMiHOG000264302.
KOiK01879.
OMAiFARPIRW.
OrthoDBiEOG661H9S.

Enzyme and pathway databases

BioCyciVSP150340:GJJG-403-MONOMER.

Family and domain databases

Gene3Di1.10.730.10. 1 hit.
HAMAPiMF_00255. Gly_tRNA_synth_beta.
InterProiIPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
IPR009080. tRNAsynth_1a_anticodon-bd.
[Graphical view]
PfamiPF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
[Graphical view]
PRINTSiPR01045. TRNASYNTHGB.
SMARTiSM00836. DALR_1. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00211. glyS. 1 hit.
PROSITEiPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Heidelberg J., Sebastian Y.
    Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: Ex25Imported.
  2. "Sequence of the deep-sea isolate Vibrio sp. strain Ex25."
    Munk A.C., Tapia R., Green L., Rogers Y., Detter J.C., Bruce D., Brettin T.S., Colwell R., Huq A., Grim C.J., Hasan N.A., Vonstein V., Bartels D.
    Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Ex25Imported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: EX25Imported.

Entry informationi

Entry nameiA7K5X5_VIBSE
AccessioniPrimary (citable) accession number: A7K5X5
Entry historyi
Integrated into UniProtKB/TrEMBL: September 11, 2007
Last sequence update: September 11, 2007
Last modified: April 29, 2015
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.