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A7K5X5 (A7K5X5_VIBSE) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Glycine--tRNA ligase beta subunit HAMAP-Rule MF_00255
EC=6.1.1.14 HAMAP-Rule MF_00255
Alternative name(s):
Glycyl-tRNA synthetase beta subunit HAMAP-Rule MF_00255
Gene names
Name:glyS HAMAP-Rule MF_00255 EMBL EDN56007.1
Ordered Locus Names:VEA_002000
ORF Names:VEx25_0007 EMBL EDN56007.1
OrganismVibrio sp. (strain Ex25) [Complete proteome] [HAMAP] EMBL EDN56007.1
Taxonomic identifier150340 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Vibrio

Protein attributes

Sequence length688 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly). SAAS SAAS015944 HAMAP-Rule MF_00255

Subunit structure

Tetramer of two alpha and two beta subunits By similarity. SAAS SAAS015944 HAMAP-Rule MF_00255

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00255.

Sequence similarities

Belongs to the class-II aminoacyl-tRNA synthetase family. HAMAP-Rule MF_00255

Sequences

Sequence LengthMass (Da)Tools
A7K5X5 [UniParc].

Last modified September 11, 2007. Version 1.
Checksum: 2B0FC1B2B5314413

FASTA68876,213
        10         20         30         40         50         60 
MAKEFLIELG TEELPPTQLR TLAEAFAANF EAELKSAELA HEGVKWFAAP RRLALKVAAL 

        70         80         90        100        110        120 
AESQSDKIVE KRGPAVSAAF DAEGNPTKAA QGWARGCGIS VDQAERMVTD KGEWLLFKQE 

       130        140        150        160        170        180 
VKGQPTSEIV VELAAKALAN LPIAKPMRWG NKTTQFIRPV KTLTMLMGSD LIEGEILGVA 

       190        200        210        220        230        240 
SDRTIRGHRF MGEQEFTIDS AEQYPAILEE RGKVMADYEA RKAIILADAQ KAAAAVGGIA 

       250        260        270        280        290        300 
DLEDDLVEEV TSLVEWPVVL TAKFEEEFLK VPSEALVYTM KGDQKYFPVY DENKKLLPNF 

       310        320        330        340        350        360 
IFVSNIESKE PRYVIEGNEK VVRPRLADAE FFFNTDRKRP LIDRLPELEQ AIFQKQLGTI 

       370        380        390        400        410        420 
KDKTDRITEL AGYIAEQIGA DVEKSKRAGL LAKCDLMTSM VFEFTDTQGV MGMHYARHDG 

       430        440        450        460        470        480 
EAEEVAVALN EQYMPRFAGD ELPSNGVSTA VAMADKLDTI VGIFGIGQAP KGSDPFALRR 

       490        500        510        520        530        540 
ASLGVLRIIV EYGYNLDLVD LVAKAKSLFV DRLTNDNVEQ DVIEFMLGRF RAWYQDEGFS 

       550        560        570        580        590        600 
VDIIQAVLAR RPTKPADFDQ RVKAVSHFRE LEAAESLAAA NKRVGNILAK FDGELAADID 

       610        620        630        640        650        660 
LALLQEDAEK ALAESVEVMT EALEPAFATG NYQEALSKLA DLREPVDAFF DNVMVMADDE 

       670        680 
ALKKNRLTLL NNLRNLFLQV ADISVLQK

« Hide

References

« Hide 'large scale' references
[1]Heidelberg J., Sebastian Y.
Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Ex25 EMBL EDN56007.1.
[2]"Sequence of the deep-sea isolate Vibrio sp. strain Ex25."
Munk A.C., Tapia R., Green L., Rogers Y., Detter J.C., Bruce D., Brettin T.S., Colwell R., Huq A., Grim C.J., Hasan N.A., Vonstein V., Bartels D.
Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Ex25.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001805 Genomic DNA. Translation: ACY50163.1.
DS267854 Genomic DNA. Translation: EDN56007.1.
RefSeqYP_003284628.1. NC_013456.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING150340.VEA_002000.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaACY50163; ACY50163; VEA_002000.
EDN56007; EDN56007; VEx25_0007.
GeneID8555640.
KEGGvex:VEA_002000.
PATRIC28405270. VBIVibSp2903_3997.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0751.
HOGENOMHOG000264302.
KOK01879.
ProtClustDBPRK01233.

Enzyme and pathway databases

BioCycVSP150340:GJJG-403-MONOMER.

Family and domain databases

HAMAPMF_00255. Gly_tRNA_synth_beta.
InterProIPR008909. DALR_anticod-bd.
IPR015944. Gly-tRNA-synth_bsu.
IPR006194. Gly-tRNA-synth_heterodimer.
[Graphical view]
PfamPF05746. DALR_1. 1 hit.
PF02092. tRNA_synt_2f. 1 hit.
[Graphical view]
PRINTSPR01045. TRNASYNTHGB.
SMARTSM00836. DALR_1. 1 hit.
[Graphical view]
TIGRFAMsTIGR00211. glyS. 1 hit.
PROSITEPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA7K5X5_VIBSE
AccessionPrimary (citable) accession number: A7K5X5
Entry history
Integrated into UniProtKB/TrEMBL: September 11, 2007
Last sequence update: September 11, 2007
Last modified: May 29, 2013
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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