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A7IQH5 (A7IQH5_XANP2) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 43. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Xaut_5073 EMBL ABS70271.1
Encoded onPlasmid pXAUT01 Ref.1 EMBL ABS70271.1
OrganismXanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) [Complete proteome] [HAMAP] EMBL ABS70271.1
Taxonomic identifier78245 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesXanthobacteraceaeXanthobacter

Protein attributes

Sequence length255 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2525 Potential EMBL ABS70271.1
Chain26 – 255230 Potential EMBL ABS70271.1
PRO_5000269011

Regions

Nucleotide binding38 – 392NAD PDB 4GH5 PDB 4ITU
Nucleotide binding64 – 652NAD PDB 4GH5 PDB 4ITU
Nucleotide binding186 – 1949NAD PDB 4GH5 PDB 4ITU

Sites

Binding site191NAD; via amide nitrogen PDB 4GH5 PDB 4ITU
Binding site911NAD; via carbonyl oxygen PDB 4GH5 PDB 4ITU
Binding site1431Acetate
Binding site1561Acetate
Binding site1561NAD PDB 4GH5 PDB 4ITU
Binding site1601NAD PDB 4GH5 PDB 4ITU

Sequences

Sequence LengthMass (Da)Tools
A7IQH5 [UniParc].

Last modified September 11, 2007. Version 1.
Checksum: 12E8F086584059B5

FASTA25525,473
        10         20         30         40         50         60 
MSNRLKNEVI AITGGGAGIG LAIASAALRE GAKVALIDLD QGLAERSAAM LSTGGAVAKG 

        70         80         90        100        110        120 
FGADVTKAAD ITAAITSAEQ TIGSLTGLVN NAGIAGFGSV HDADAAAWDR IMAVNVTGTF 

       130        140        150        160        170        180 
LASKAALAGM LERHKGTIVN FGSVAGLVGI PTMAAYCAAK GAIVNLTRQM AADYSGRGVR 

       190        200        210        220        230        240 
VNAVCPGTVT STGMGQQLLG SDTSPEVQAR RLAKYPIGRF GTPEDIAEAV IFLLSDQAAF 

       250 
VTGAAFAVDG GMTAI 

« Hide

References

« Hide 'large scale' references
[1]"Complete sequence of plasmid pXAUT01 of Xanthobacter autotrophicus Py2."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Detter J.C., Han C., Tapia R., Brainard J., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Ensigns S.A., Richardson P.
Submitted (JUL-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-1158 / Py2.
[2]"Crystal structures of S-HPCDH reveal determinants of stereospecificity for R- and S-hydroxypropyl-coenzyme M dehydrogenases."
Bakelar J.W., Sliwa D.A., Johnson S.J.
Arch. Biochem. Biophys. 533:62-68(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) IN COMPLEX WITH ACETATE AND NAD.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000782 Genomic DNA. Translation: ABS70271.1.
RefSeqYP_001409507.1. NC_009717.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4GH5X-ray1.60A/B/C/D1-255[»]
4ITUX-ray1.60A/B/C/D1-255[»]
ProteinModelPortalA7IQH5.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING78245.Xaut_5073.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABS70271; ABS70271; Xaut_5073.
GeneID5420366.
KEGGxau:Xaut_5073.
PATRIC24041913. VBIXanAut29526_0268.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1028.
OMATIFAINA.
OrthoDBEOG6N3CR8.
ProtClustDBCLSK979092.

Enzyme and pathway databases

BioCycXAUT78245:GHS6-5131-MONOMER.

Family and domain databases

Gene3D3.40.50.720. 1 hit.
InterProIPR002198. DH_sc/Rdtase_SDR.
IPR002347. Glc/ribitol_DH.
IPR016040. NAD(P)-bd_dom.
IPR020904. Sc_DH/Rdtase_CS.
[Graphical view]
PfamPF00106. adh_short. 1 hit.
[Graphical view]
PRINTSPR00081. GDHRDH.
PR00080. SDRFAMILY.
PROSITEPS00061. ADH_SHORT. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA7IQH5_XANP2
AccessionPrimary (citable) accession number: A7IQH5
Entry history
Integrated into UniProtKB/TrEMBL: September 11, 2007
Last sequence update: September 11, 2007
Last modified: April 16, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)