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A7IFC5 (A7IFC5_XANP2) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 42. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Xaut_1470 EMBL ABS66718.1
OrganismXanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) [Complete proteome] [HAMAP] EMBL ABS66718.1
Taxonomic identifier78245 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesXanthobacteraceaeXanthobacter

Protein attributes

Sequence length542 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
A7IFC5 [UniParc].

Last modified September 11, 2007. Version 1.
Checksum: 9E8B16F69E63C577

FASTA54259,821
        10         20         30         40         50         60 
MNRFAALLDR MSYEAGRNAK IRLMADYFRT TPDPERGFAL AALTGALSFA NAKPGVVRAL 

        70         80         90        100        110        120 
IMERADPVLF EMSYDYVGDL SETVALMWPR LEGAPTHAPL LSEIVHGLST LSRSTLPRRL 

       130        140        150        160        170        180 
ADWLDGLDET GRWALLKLIT GAMRVGASAR LAKTALASLG SVTPDEVELV WPGLAPPYEE 

       190        200        210        220        230        240 
LFAWVEGHGP RPETSNPAPF RPVMLAHAIE EANFADLAPG DFSAEWKWDG IRVQAVAGTG 

       250        260        270        280        290        300 
ADGVRAVRLY SRTGEDISEA FPDLADAIAF NGAMDGELLI VRAGRVEPFN VLQQRLNRKS 

       310        320        330        340        350        360 
VTVKMLAEFP AHIRAYDLLV DGDEDLRALP FTARRARLEA LVTRLSSPRI DLSPLVPFAG 

       370        380        390        400        410        420 
WDDLTRARAD PASAGAGPDA GAVEGVMIKR GDSPYLPGRP KGPWWKWKRD PHTVDAVLMY 

       430        440        450        460        470        480 
AQRGHGKRSS FYSDYTFGVW TQGEEGDVLV PVGKAYFGFT DEELKLIDAF VRRATINRFG 

       490        500        510        520        530        540 
PVREVVHEKD EGLVLEVAFE GLARSTRHRS GIAMRFPRIA RLRWDKPPGE ADRLETLEAL 


LR 

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References

[1]"Complete sequence of chromosome of Xanthobacter autotrophicus Py2."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Detter J.C., Han C., Tapia R., Brainard J., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Ensigns S.A., Richardson P.
Submitted (JUL-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-1158 / Py2.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000781 Genomic DNA. Translation: ABS66718.1.
RefSeqYP_001416375.1. NC_009720.1.

3D structure databases

ProteinModelPortalA7IFC5.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING78245.Xaut_1470.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABS66718; ABS66718; Xaut_1470.
GeneID5420779.
KEGGxau:Xaut_1470.
PATRIC24044945. VBIXanAut29526_1769.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000036007.
KOK01971.
OMARVWLWSR.
OrthoDBEOG6Q8HXT.

Enzyme and pathway databases

BioCycXAUT78245:GHS6-1484-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA7IFC5_XANP2
AccessionPrimary (citable) accession number: A7IFC5
Entry history
Integrated into UniProtKB/TrEMBL: September 11, 2007
Last sequence update: September 11, 2007
Last modified: May 14, 2014
This is version 42 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)