A7IFC5 (A7IFC5_XANP2) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ABS66718.1

Gene names

Ordered Locus Names:

Xaut_1470 EMBL ABS66718.1

Organism

Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) [Complete proteome] [HAMAP] EMBL ABS66718.1

Taxonomic identifier

78245 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Xanthobacteraceae › Xanthobacter › Xanthobacter autotrophicus

Protein attributes

Sequence length	542 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABS66718.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A7IFC5 [UniParc]. Last modified September 11, 2007. Version 1. Checksum: 9E8B16F69E63C577	FASTA	542	59,821
	10 20 30 40 50 60 MNRFAALLDR MSYEAGRNAK IRLMADYFRT TPDPERGFAL AALTGALSFA NAKPGVVRAL 70 80 90 100 110 120 IMERADPVLF EMSYDYVGDL SETVALMWPR LEGAPTHAPL LSEIVHGLST LSRSTLPRRL 130 140 150 160 170 180 ADWLDGLDET GRWALLKLIT GAMRVGASAR LAKTALASLG SVTPDEVELV WPGLAPPYEE 190 200 210 220 230 240 LFAWVEGHGP RPETSNPAPF RPVMLAHAIE EANFADLAPG DFSAEWKWDG IRVQAVAGTG 250 260 270 280 290 300 ADGVRAVRLY SRTGEDISEA FPDLADAIAF NGAMDGELLI VRAGRVEPFN VLQQRLNRKS 310 320 330 340 350 360 VTVKMLAEFP AHIRAYDLLV DGDEDLRALP FTARRARLEA LVTRLSSPRI DLSPLVPFAG 370 380 390 400 410 420 WDDLTRARAD PASAGAGPDA GAVEGVMIKR GDSPYLPGRP KGPWWKWKRD PHTVDAVLMY 430 440 450 460 470 480 AQRGHGKRSS FYSDYTFGVW TQGEEGDVLV PVGKAYFGFT DEELKLIDAF VRRATINRFG 490 500 510 520 530 540 PVREVVHEKD EGLVLEVAFE GLARSTRHRS GIAMRFPRIA RLRWDKPPGE ADRLETLEAL LR

References

[1]

"Complete sequence of chromosome of Xanthobacter autotrophicus Py2." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Detter J.C., Han C., Tapia R., Brainard J., Schmutz J. , Larimer F., Land M., Hauser L., Kyrpides N., Kim E., Ensigns S.A., Richardson P. Submitted (JUL-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-1158 / Py2.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000781 Genomic DNA. Translation: ABS66718.1.
RefSeq	YP_001416375.1. NC_009720.1.
3D structure databases
ProteinModelPortal	A7IFC5.
ModBase	Search...
Protein-protein interaction databases
STRING	78245.Xaut_1470.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABS66718; ABS66718; Xaut_1470.
GeneID	5420779.
KEGG	xau:Xaut_1470.
PATRIC	24044945. VBIXanAut29526_1769.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	CLSK979442.
Enzyme and pathway databases
BioCyc	XAUT78245:GHS6-1484-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A7IFC5_XANP2

Accession

Primary (citable) accession number: A7IFC5

Entry history

Integrated into UniProtKB/TrEMBL:	September 11, 2007
Last sequence update:	September 11, 2007
Last modified:	May 29, 2013
This is version 39 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)