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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Xaut_1470

Organism
Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciXAUT78245:GHS6-1484-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Xaut_1470Imported
OrganismiXanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)Imported
Taxonomic identifieri78245 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesXanthobacteraceaeXanthobacter
ProteomesiUP000002417 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi78245.Xaut_1470.

Structurei

3D structure databases

ProteinModelPortaliA7IFC5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A7IFC5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNRFAALLDR MSYEAGRNAK IRLMADYFRT TPDPERGFAL AALTGALSFA
60 70 80 90 100
NAKPGVVRAL IMERADPVLF EMSYDYVGDL SETVALMWPR LEGAPTHAPL
110 120 130 140 150
LSEIVHGLST LSRSTLPRRL ADWLDGLDET GRWALLKLIT GAMRVGASAR
160 170 180 190 200
LAKTALASLG SVTPDEVELV WPGLAPPYEE LFAWVEGHGP RPETSNPAPF
210 220 230 240 250
RPVMLAHAIE EANFADLAPG DFSAEWKWDG IRVQAVAGTG ADGVRAVRLY
260 270 280 290 300
SRTGEDISEA FPDLADAIAF NGAMDGELLI VRAGRVEPFN VLQQRLNRKS
310 320 330 340 350
VTVKMLAEFP AHIRAYDLLV DGDEDLRALP FTARRARLEA LVTRLSSPRI
360 370 380 390 400
DLSPLVPFAG WDDLTRARAD PASAGAGPDA GAVEGVMIKR GDSPYLPGRP
410 420 430 440 450
KGPWWKWKRD PHTVDAVLMY AQRGHGKRSS FYSDYTFGVW TQGEEGDVLV
460 470 480 490 500
PVGKAYFGFT DEELKLIDAF VRRATINRFG PVREVVHEKD EGLVLEVAFE
510 520 530 540
GLARSTRHRS GIAMRFPRIA RLRWDKPPGE ADRLETLEAL LR
Length:542
Mass (Da):59,821
Last modified:September 11, 2007 - v1
Checksum:i9E8B16F69E63C577
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000781 Genomic DNA. Translation: ABS66718.1.
RefSeqiWP_012113491.1. NC_009720.1.
YP_001416375.1. NC_009720.1.

Genome annotation databases

EnsemblBacteriaiABS66718; ABS66718; Xaut_1470.
KEGGixau:Xaut_1470.
PATRICi24044945. VBIXanAut29526_1769.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000781 Genomic DNA. Translation: ABS66718.1.
RefSeqiWP_012113491.1. NC_009720.1.
YP_001416375.1. NC_009720.1.

3D structure databases

ProteinModelPortaliA7IFC5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi78245.Xaut_1470.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABS66718; ABS66718; Xaut_1470.
KEGGixau:Xaut_1470.
PATRICi24044945. VBIXanAut29526_1769.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.
OrthoDBiEOG6Q8HXT.

Enzyme and pathway databases

BioCyciXAUT78245:GHS6-1484-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-1158 / Py2Imported.

Entry informationi

Entry nameiA7IFC5_XANP2
AccessioniPrimary (citable) accession number: A7IFC5
Entry historyi
Integrated into UniProtKB/TrEMBL: September 11, 2007
Last sequence update: September 11, 2007
Last modified: April 1, 2015
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.