A7IB34 (A7IB34_METB6) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Diaminopimelate epimerase HAMAP MF_00197
Short name=DAP epimerase HAMAP MF_00197
EC=5.1.1.7 HAMAP MF_00197

Gene names

Name:	dapF HAMAP MF_00197
Ordered Locus Names:	Mboo_2431

Organism

Methanoregula boonei (strain 6A8) [Complete proteome] [HAMAP]

Taxonomic identifier

456442 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Methanomicrobia › Methanomicrobiales › Genera incertae sedis › Methanoregula

Protein attributes

Sequence length	275 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	LL-2,6-diaminoheptanedioate = meso-diaminoheptanedioate. HAMAP MF_00197
Pathway	Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1. HAMAP MF_00197
Subcellular location	Cytoplasm By similarity HAMAP MF_00197.
Sequence similarities	Belongs to the diaminopimelate epimerase family. HAMAP MF_00197

Ontologies

Keywords
Biological process	Amino-acid biosynthesis Lysine biosynthesis HAMAP MF_00197
Cellular component	Cytoplasm HAMAP MF_00197
Molecular function	Isomerase HAMAP MF_00197 EMBL ABS56945.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	lysine biosynthetic process via diaminopimelate Inferred from electronic annotation. Source: HAMAP
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	diaminopimelate epimerase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Sites
	Active site	77	1	By similarity HAMAP MF_00197
	Active site	219	1	By similarity HAMAP MF_00197

Sequences

	Sequence		Length	Mass (Da)
	A7IB34 [UniParc]. Last modified September 11, 2007. Version 1. Checksum: 6B70B409FBF9D633	FASTA	275	29,919
	10 20 30 40 50 60 MEIPFVKLHG NGNDFVLIDE YAQMIIPDDL KGQFAALYCE RRFGIGADGI LFLAKPTRKA 70 80 90 100 110 120 DIRMRILQPD ESEAEMCGNG IRCLAKYAYD MGYIQETCTV QTEAGDLEVS VRYEGEECTV 130 140 150 160 170 180 TIGMGEPKFK RKDIPATGKG EYHEQIGGFE VHAVNTGVPH AVILTDDLGS IDLAAVAPQI 190 200 210 220 230 240 RNHPTFPHGA NVNFVQKTGE DSIRVRTFER GVEDETLSCG TGATASAAVV HHLGYMNGPV 250 260 270 QVETKGGPLT IHFDPEGKAR MEGPAVAVFS GLILY

References

[1]

"Complete sequence of Candidatus Methanoregula boonei 6A8." Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Meincke L., Brettin T., Bruce D., Detter J.C., Han C., Tapia R., Gilna P., Schmutz J., Larimer F., Land M. , Hauser L., Kyrpides N., Kim E., Zinder S., Richardson P. Submitted (JUL-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 6A8.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000780 Genomic DNA. Translation: ABS56945.1.
RefSeq	YP_001405588.1. NC_009712.1.
3D structure databases
ProteinModelPortal	A7IB34.
ModBase	Search...
Protein-protein interaction databases
STRING	A7IB34.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5410695.
GenomeReviews	Gene locus Mboo_2431 in contig CP000780_GR.
KEGG	mbn:Mboo_2431.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	arNOG07445.
HOGENOM	HBG399442.
OMA	FMTGPAT.
ProtClustDB	PRK00450.
Family and domain databases
HAMAP	MF_00197. DAP_epimerase. [Tree]
InterPro	IPR001653. DAP_epimerase_DapF. [Graphical view]
KO	K01778.
Pfam	PF01678. DAP_epimerase. 2 hits. [Graphical view]
TIGRFAMs	TIGR00652. DapF. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A7IB34_METB6

Accession

Primary (citable) accession number: A7IB34

Entry history

Integrated into UniProtKB/TrEMBL:	September 11, 2007
Last sequence update:	September 11, 2007
Last modified:	November 16, 2011
This is version 30 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)