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Protein

DNA ligase

Gene

lig

Organism
Methanoregula boonei (strain DSM 21154 / JCM 14090 / 6A8)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.UniRule annotation

Catalytic activityi

ATP + (deoxyribonucleotide)(n)-3'-hydroxyl + 5'-phospho-(deoxyribonucleotide)(m) = (deoxyribonucleotide)(n+m) + AMP + diphosphate.UniRule annotation

Cofactori

Mg2+UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei244ATPUniRule annotation1
Active sitei246N6-AMP-lysine intermediateUniRule annotation1
Binding sitei251ATPUniRule annotation1
Binding sitei266ATPUniRule annotation1
Binding sitei295ATPUniRule annotation1
Binding sitei334ATPUniRule annotation1
Binding sitei405ATPUniRule annotation1
Binding sitei411ATPUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigase
Biological processCell cycle, Cell division, DNA damage, DNA recombination, DNA repair, DNA replication
LigandATP-binding, Magnesium, Metal-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciMBOO456442:G1G9N-2284-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Alternative name(s):
Polydeoxyribonucleotide synthase [ATP]UniRule annotation
Gene namesi
Name:ligUniRule annotation
Ordered Locus Names:Mboo_2156
OrganismiMethanoregula boonei (strain DSM 21154 / JCM 14090 / 6A8)
Taxonomic identifieri456442 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanomicrobialesMethanoregulaceaeMethanoregula
Proteomesi
  • UP000002408 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003652561 – 550DNA ligaseAdd BLAST550

Proteomic databases

PRIDEiA7IAA9

Interactioni

Protein-protein interaction databases

STRINGi456442.Mboo_2156

Structurei

3D structure databases

ProteinModelPortaliA7IAA9
SMRiA7IAA9
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG01347 Archaea
COG1793 LUCA
HOGENOMiHOG000036008
KOiK10747
OMAiWLFEESY
OrthoDBiPOG093Z03L0

Family and domain databases

Gene3Di1.10.3260.10, 1 hit
HAMAPiMF_00407 DNA_ligase, 1 hit
InterProiView protein in InterPro
IPR022865 DNA_ligae_ATP-dep_bac/arc
IPR000977 DNA_ligase_ATP-dep
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR016059 DNA_ligase_ATP-dep_CS
IPR012308 DNA_ligase_ATP-dep_N
IPR036599 DNA_ligase_N_sf
IPR012340 NA-bd_OB-fold
PfamiView protein in Pfam
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF04675 DNA_ligase_A_N, 1 hit
SUPFAMiSSF117018 SSF117018, 1 hit
SSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR00574 dnl1, 1 hit
PROSITEiView protein in PROSITE
PS00333 DNA_LIGASE_A2, 1 hit
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

A7IAA9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLFSEFAQVC EELEHLSGRL DMIEVISRAL PDLAPDELPV FVRFVMGRIF
60 70 80 90 100
PDWSAQKLGI GPNLLYEAVR QAAGVKLETV ITRINQQGDV GRAVEDILAK
110 120 130 140 150
KTQVSWSHQD LELVYVYNKL TGISSRGGVT SQKEKIRIAM LLLGDASPLE
160 170 180 190 200
GRYLARIMLE ELRIGVGEGT VREAIAKAFM VDSALVEHAM QAINDLGEVA
210 220 230 240 250
RLAKKGPTAL SDVHITPFHP VKMMLAQQGT IAGMIEDHGE IAAEYKYDGS
260 270 280 290 300
RFQFHKEGAK ARMYSRRLED VSEALPDVID LLSKATSHDV ILDGEVIAIK
310 320 330 340 350
DDRPMPFQSV LRRFRRRHDI AEAQEAIRMV PNVFDILYLD GETLIDLPFF
360 370 380 390 400
ERRKKLETVV GKFVAPQVVS TDPQTIEQTY HDALAAGHEG IMLKVPASPY
410 420 430 440 450
TPGQRGKNWI KIKPEVDTLD LAVIGAEWGE GKRAHVFGSF LVACQDQGKL
460 470 480 490 500
IPLSRVATGF SDEQLTEVYD LLKDAVISRT GKEVRFEPEL VFEVGYAELQ
510 520 530 540 550
VSPTYDAGFA LRFPRFIRIR DDKDTTEIET LESIRGRYQR QAKSAQAYTK
Length:550
Mass (Da):61,583
Last modified:September 11, 2007 - v1
Checksum:i9029C3918A446474
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000780 Genomic DNA Translation: ABS56670.1
RefSeqiWP_012107728.1, NC_009712.1

Genome annotation databases

EnsemblBacteriaiABS56670; ABS56670; Mboo_2156
GeneIDi5410132
KEGGimbn:Mboo_2156

Similar proteinsi

Entry informationi

Entry nameiDNLI_METB6
AccessioniPrimary (citable) accession number: A7IAA9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 3, 2009
Last sequence update: September 11, 2007
Last modified: May 23, 2018
This is version 68 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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