A7HY72 (A7HY72_PARL1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA topoisomerase IV, B subunit EMBL ABS64855.1
EC=5.99.1.3 EMBL ABS64855.1

Gene names

Ordered Locus Names:

Plav_3250

Organism

Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) [Complete proteome] [HAMAP]

Taxonomic identifier

402881 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Phyllobacteriaceae › Parvibaculum

Protein attributes

Sequence length	679 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the type II topoisomerase family. RuleBase RU000380

Ontologies

Keywords
Ligand	ATP-binding RuleBase RU000380 SAAS SAAS002288 Nucleotide-binding
Molecular function	Isomerase Topoisomerase RuleBase RU000380 SAAS SAAS002288
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	DNA topological change Inferred from electronic annotation. Source: InterPro
Cellular component	chromosome Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW DNA topoisomerase (ATP-hydrolyzing) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A7HY72 [UniParc]. Last modified September 11, 2007. Version 1. Checksum: D1B641E1D571C3DB	FASTA	679	73,851
	10 20 30 40 50 60 MAARKTSKSD DTDDLFAAAP KAAKPARAPK GAPRDDGTYS AKDIEVLEGL EPVRRRPGMY 70 80 90 100 110 120 IGGTDEKALH HLFAEVLDNS MDEAVAGHAN WIEVTVSEDG SLTVADNGRG IPVDPHPKFK 130 140 150 160 170 180 NKSALEVILT TLHSGGKFGG KAYETSGGLH GVGVSVVNAL SDRFEVEVAR DQTLYTQSYA 190 200 210 220 230 240 RGVPTTKLTD KGRTQNRRGT KITFHPDADI FGKGAHFIPK RLYKMARSKA YLFGGVEIRW 250 260 270 280 290 300 NCAPSLIGEK DDTPVNDVLH FPGGLVDYLK ASINGYDTVT AEPFTGKVSR AGSHGSVEWA 310 320 330 340 350 360 IAWFGGGDGF LNSYCNTVPT AEGGTHEAGL RAALTKGLKA YADMVGNKKA AQIQAEDVLG 370 380 390 400 410 420 TAGAMLSVFI REPEFQGQTK EKLASAEAQR LVERAIGDHF DHWLTAAPQQ ANKLLDWVID 430 440 450 460 470 480 RADDRLRRRQ EKDVARKSAT RKLRLPGKLA DCSQSAADGS EIFLVEGDSA GGSAKQARDR 490 500 510 520 530 540 ASQAILPLRG KILNVASASG AKLAQSQQIS DLIQALGVRT GSHYRQADLR YDKVIIMTDA 550 560 570 580 590 600 DVDGAHIASL LITFFYRELP ELIREGHLYM AVPPLYKLTQ GGKTLYARDD AHKDELLKAE 610 620 630 640 650 660 FSGRGKVEIS RFKGLGEMMP AQLKETTMAR GKRTLMRVVV PEAEAKETSG AIERLMGNKP 670 ELRFQFIQEH AAFAHDLDI

References

[1]

"Complete genome sequence and annotation of Parvibaculum lavamentivorans DS-1." Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Richardson P. Submitted (JUL-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DS-1 / DSM 13023 / NCIMB 13966.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000774 Genomic DNA. Translation: ABS64855.1.
RefSeq	YP_001414512.1. NC_009719.1.
3D structure databases
ProteinModelPortal	A7HY72.
ModBase	Search...
Protein-protein interaction databases
STRING	A7HY72.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5456966.
GenomeReviews	Gene locus Plav_3250 in contig CP000774_GR.
KEGG	pla:Plav_3250.
PATRIC	22868309. VBIParLav90819_3358.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0187.
HOGENOM	HBG304889.
OMA	QARDKEF.
ProtClustDB	PRK05559.
Family and domain databases
InterPro	IPR003594. ATPase-like_ATP-bd. IPR020568. Ribosomal_S5_D2-typ_fold. IPR014721. Ribosomal_S5_D2-typ_fold_subgr. IPR001241. Topo_IIA. IPR013759. Topo_IIA_B/N_ab. IPR002288. Topo_IIA_B_C. IPR013506. Topo_IIA_bsu_dom2. IPR013760. Topo_IIA_cen. IPR018522. TopoIIA_CS. IPR005737. TopoIV_B_Gneg. IPR006171. Toprim_domain. [Graphical view]
Gene3D	G3DSA:3.30.565.10. ATP_bd_ATPase. 1 hit. G3DSA:3.30.230.10. Ribosomal_S5_D2-type_fold. 1 hit. G3DSA:3.40.50.670. Topo_IIA_B/N_ab. 1 hit.
KO	K02622.
Pfam	PF00204. DNA_gyraseB. 1 hit. PF00986. DNA_gyraseB_C. 1 hit. PF02518. HATPase_c. 1 hit. PF01751. Toprim. 1 hit. [Graphical view]
PRINTS	PR00418. TPI2FAMILY.
SMART	SM00387. HATPase_c. 1 hit. SM00433. TOP2c. 1 hit. [Graphical view]
SUPFAM	SSF55874. ATP_bd_ATPase. 1 hit. SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit. SSF56719. Topo_IIA_cen. 1 hit.
TIGRFAMs	TIGR01055. ParE_Gneg. 1 hit.
PROSITE	PS00177. TOPOISOMERASE_II. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A7HY72_PARL1

Accession

Primary (citable) accession number: A7HY72

Entry history

Integrated into UniProtKB/TrEMBL:	September 11, 2007
Last sequence update:	September 11, 2007
Last modified:	January 25, 2012
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)