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Protein
Submitted name:

DNA ligase D

Gene

Anae109_0939

Organism
Anaeromyxobacter sp. (strain Fw109-5)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ligase

Enzyme and pathway databases

BioCyciASP404589:GHMT-943-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Anae109_0939Imported
OrganismiAnaeromyxobacter sp. (strain Fw109-5)Imported
Taxonomic identifieri404589 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaDeltaproteobacteriaMyxococcalesCystobacterineaeAnaeromyxobacteraceaeAnaeromyxobacter
ProteomesiUP000006382 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi404589.Anae109_0939.

Structurei

3D structure databases

ProteinModelPortaliA7H8V2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiQPRIANS.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A7H8V2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPDRLERYRA KRDPERTPEP FGPAEAGARA LDAPRLFVVQ KHAARRLHWD
60 70 80 90 100
FRLELGGTLR SWAVPKGPSA DPSDKRMAVE VEDHPIEYAN FEGIIPAGNY
110 120 130 140 150
GAGAVIVWDR GTWRPVGDPY DGLARGKLVF QLSGHKLHGE WTLVRTRAAQ
160 170 180 190 200
GGKQQWLLLK HRGDAWAGPG RPFPEESVLS GRLLEELAAG EGRAEAAVRA
210 220 230 240 250
AEGLGAPRRA LADADARPML AETREGPFDA PGWLFELKYD GYRLVARREG
260 270 280 290 300
SRVSLRYRSG EDATALYPEL AKALESWPLD AVLDGEVVVL GPDGRPSFQA
310 320 330 340 350
LQGRAQLARP ADVARAALER PATYFVFDLL SLAGLDLRAL PLVERKRLLA
360 370 380 390 400
EVAPRLGPVR LAEHVEARGE DLYREVRARG LEGIVAKRAD APYRAGRSAA
410 420 430 440 450
WLKIRVERTG DFAIVGFTAP AGARARFGAL HLAVHDGEGL LYAGSVGTGF
460 470 480 490 500
GERLLEELHA RLAPRARKTP PCRGAVPRGR GHTWVEPELV CEVRFREWTA
510 520 530 540 550
EGLLRQPVFL RLREDKRPEE AVREVAPHEG PPPVPRPARA ERRVEVTNGA
560 570 580 590 600
KVWFPAEGIT KAEVVDYYRA IAPFMLPYLR DRPVVLTRYP DGIDGKSFFQ
610 620 630 640 650
KDAPEWRPEW IRTVRIRSEE AERDLDHFLV DDADGLAWIA NLGTIPLHVW
660 670 680 690 700
ASRAGALERP DWCVVDLDPK EAPFEHVVRI ARALHALCDD LGLPSYPKTT
710 720 730 740 750
GQKGLHVLVP LGGQLTHAQS RTLGELLARA VEGELPRLAT TARALSARGG
760 770 780 790 800
RVYLDFLQNG YGKTIAAPYA VRPRPGAPVS TPLRWSEVTP RLDPARFTIR
810 820 830 840
NVPARARRLR ADPLLPVLSE RPDLAAALER LRVRMGEGER AAARRRS
Length:847
Mass (Da):93,852
Last modified:September 11, 2007 - v1
Checksum:i0F918EBD12DFCD1E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000769 Genomic DNA. Translation: ABS25148.1.
RefSeqiWP_011985254.1. NC_009675.1.
YP_001378132.1. NC_009675.1.

Genome annotation databases

EnsemblBacteriaiABS25148; ABS25148; Anae109_0939.
KEGGiafw:Anae109_0939.
PATRICi20927007. VBIAnaSp113478_0988.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000769 Genomic DNA. Translation: ABS25148.1.
RefSeqiWP_011985254.1. NC_009675.1.
YP_001378132.1. NC_009675.1.

3D structure databases

ProteinModelPortaliA7H8V2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi404589.Anae109_0939.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABS25148; ABS25148; Anae109_0939.
KEGGiafw:Anae109_0939.
PATRICi20927007. VBIAnaSp113478_0988.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiQPRIANS.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciASP404589:GHMT-943-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Fw109-5Imported.

Entry informationi

Entry nameiA7H8V2_ANADF
AccessioniPrimary (citable) accession number: A7H8V2
Entry historyi
Integrated into UniProtKB/TrEMBL: September 11, 2007
Last sequence update: September 11, 2007
Last modified: May 27, 2015
This is version 49 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.