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A7H8V2 (A7H8V2_ANADF) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
DNA ligase D EMBL ABS25148.1
Gene names
Ordered Locus Names:Anae109_0939
OrganismAnaeromyxobacter sp. (strain Fw109-5) [Complete proteome] [HAMAP] EMBL ABS25148.1
Taxonomic identifier404589 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Deltaproteobacteria › Myxococcales › Cystobacterineae › Myxococcaceae › Anaeromyxobacter

Protein attributes

Sequence length847 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABS25148.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A7H8V2 [UniParc].

Last modified September 11, 2007. Version 1.
Checksum: 0F918EBD12DFCD1E

FASTA84793,852
        10         20         30         40         50         60 
MPDRLERYRA KRDPERTPEP FGPAEAGARA LDAPRLFVVQ KHAARRLHWD FRLELGGTLR 

        70         80         90        100        110        120 
SWAVPKGPSA DPSDKRMAVE VEDHPIEYAN FEGIIPAGNY GAGAVIVWDR GTWRPVGDPY 

       130        140        150        160        170        180 
DGLARGKLVF QLSGHKLHGE WTLVRTRAAQ GGKQQWLLLK HRGDAWAGPG RPFPEESVLS 

       190        200        210        220        230        240 
GRLLEELAAG EGRAEAAVRA AEGLGAPRRA LADADARPML AETREGPFDA PGWLFELKYD 

       250        260        270        280        290        300 
GYRLVARREG SRVSLRYRSG EDATALYPEL AKALESWPLD AVLDGEVVVL GPDGRPSFQA 

       310        320        330        340        350        360 
LQGRAQLARP ADVARAALER PATYFVFDLL SLAGLDLRAL PLVERKRLLA EVAPRLGPVR 

       370        380        390        400        410        420 
LAEHVEARGE DLYREVRARG LEGIVAKRAD APYRAGRSAA WLKIRVERTG DFAIVGFTAP 

       430        440        450        460        470        480 
AGARARFGAL HLAVHDGEGL LYAGSVGTGF GERLLEELHA RLAPRARKTP PCRGAVPRGR 

       490        500        510        520        530        540 
GHTWVEPELV CEVRFREWTA EGLLRQPVFL RLREDKRPEE AVREVAPHEG PPPVPRPARA 

       550        560        570        580        590        600 
ERRVEVTNGA KVWFPAEGIT KAEVVDYYRA IAPFMLPYLR DRPVVLTRYP DGIDGKSFFQ 

       610        620        630        640        650        660 
KDAPEWRPEW IRTVRIRSEE AERDLDHFLV DDADGLAWIA NLGTIPLHVW ASRAGALERP 

       670        680        690        700        710        720 
DWCVVDLDPK EAPFEHVVRI ARALHALCDD LGLPSYPKTT GQKGLHVLVP LGGQLTHAQS 

       730        740        750        760        770        780 
RTLGELLARA VEGELPRLAT TARALSARGG RVYLDFLQNG YGKTIAAPYA VRPRPGAPVS 

       790        800        810        820        830        840 
TPLRWSEVTP RLDPARFTIR NVPARARRLR ADPLLPVLSE RPDLAAALER LRVRMGEGER 


AAARRRS

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References

[1]"Complete sequence of Anaeromyxobacter sp. Fw109-5."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Lykidis A., Fields M., Richardson P.
Submitted (JUL-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Fw109-5.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000769 Genomic DNA. Translation: ABS25148.1.
RefSeqYP_001378132.1. NC_009675.1.

3D structure databases

ProteinModelPortalA7H8V2.
ModBaseSearch...

Protein-protein interaction databases

STRING404589.Anae109_0939.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABS25148; ABS25148; Anae109_0939.
GeneID5373860.
KEGGafw:Anae109_0939.
PATRIC20927007. VBIAnaSp113478_0988.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3285.
HOGENOMHOG000222509.
KOK01971.
OMAKTIAAPY.
ProtClustDBCLSK2793139.

Enzyme and pathway databases

BioCycASP404589:GHMT-943-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA7H8V2_ANADF
AccessionPrimary (citable) accession number: A7H8V2
Entry history
Integrated into UniProtKB/TrEMBL: September 11, 2007
Last sequence update: September 11, 2007
Last modified: May 29, 2013
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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