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A7GW47 (A7GW47_CAMC5) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Peptide deformylase HAMAP MF_00163
Short name=PDF HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase HAMAP MF_00163
Gene names
Name:def HAMAP MF_00163 EMBL EAU00621.1
Ordered Locus Names:Ccur92_01350
ORF Names:CCV52592_1501 EMBL EAU00621.1
OrganismCampylobacter curvus (strain 525.92) [Complete proteome] [HAMAP]
Taxonomic identifier360105 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Epsilonproteobacteria › Campylobacterales › Campylobacteraceae › Campylobacter

Protein attributes

Sequence length174 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. HAMAP MF_00163 RuleBase RU003335

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1381 By similarity HAMAP MF_00163
Metal binding951Iron By similarity HAMAP MF_00163
Metal binding1371Iron By similarity HAMAP MF_00163
Metal binding1411Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
A7GW47 [UniParc].

Last modified September 11, 2007. Version 1.
Checksum: 29145EE83298919C

FASTA17420,249
        10         20         30         40         50         60 
MVLEILSYPN KKLYEVSKEV ETFDEELHKL LDDMYETMIA KDGIGLAAIQ VGVAKRIFIV 

        70         80         90        100        110        120 
NLSNEEGVQD KADLIEIINP EFELKVGECV YQEGCLSVPG FYEDVKRAER VKIKFQDRFG 

       130        140        150        160        170 
QERQIETDGL LAVALQHEND HLDGHLFIEK IGYNKRKKFE KEYKSKKNKK EHRL

« Hide

References

[1]"Genome sequence of Campylobacter curvus 525.92 isolated from human feces."
Fouts D.E., Mongodin E.F., Puiu D., Sebastian Y., Miller W.G., Mandrell R.E., Lastovica A.J., Nelson K.E.
Submitted (JUL-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000767 Genomic DNA. Translation: EAU00621.1.
RefSeqYP_001407439.1. NC_009715.1.

3D structure databases

ProteinModelPortalA7GW47.
SMRA7GW47. Positions 2-162.
ModBaseSearch...

Protein-protein interaction databases

STRINGA7GW47.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5406823.
GenomeReviewsGene locus Ccur92_01350 in contig CP000767_GR.
KEGGccv:CCV52592_1501.
PATRIC20030638. VBICamCur47627_0145.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0242.
HOGENOMHBG665227.
OMAVQITIPR.
ProtClustDBPRK00150.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA7GW47_CAMC5
AccessionPrimary (citable) accession number: A7GW47
Entry history
Integrated into UniProtKB/TrEMBL: September 11, 2007
Last sequence update: September 11, 2007
Last modified: December 14, 2011
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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