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Protein

Ribosomal RNA small subunit methyltransferase B

Gene

sun

Organism
Clostridium botulinum (strain Langeland / NCTC 10281 / Type F)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

MethyltransferaseSAAS annotationImported, Transferase

Keywords - Biological processi

rRNA processingSAAS annotation

Keywords - Ligandi

RNA-bindingSAAS annotation, S-adenosyl-L-methionineSAAS annotation

Enzyme and pathway databases

BioCyciCBOT441772:GJIE-2533-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosomal RNA small subunit methyltransferase BSAAS annotation (EC:2.1.1.-SAAS annotation)
Gene namesi
Name:sunImported
Ordered Locus Names:CLI_2568Imported
OrganismiClostridium botulinum (strain Langeland / NCTC 10281 / Type F)Imported
Taxonomic identifieri441772 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesClostridiaceaeClostridium
Proteomesi
  • UP000002410 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

CytoplasmSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliA7GG93.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini169 – 442274SAM_MT_RSMB_NOPInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.SAAS annotation

Phylogenomic databases

HOGENOMiHOG000037300.
KOiK03500.
OMAiHIGLYQL.
OrthoDBiEOG6091D0.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR004573. rRNA_ssu_MeTfrase_B.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00563. rsmB. 1 hit.
PROSITEiPS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A7GG93-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDNAREVALD VLKAVLFEGA YSNIVLSKKL NKSNLKDNDK ALITEIVYGT
60 70 80 90 100
LKYKETLDII IQSYLRNPIK TMDKNIVNIL RITIYQIRYL DKIPSFAAVN
110 120 130 140 150
EAVEMSKKIS IKYSKLVNGV LRNYIRTYKN KKFYDHRNNL EKFSFMYSYP
160 170 180 190 200
KWLIKMFISQ YGIEMAEKIL KGLNERPNIT VRVNNLKIDY DEAFEKLGEY
210 220 230 240 250
GYNIEEGYIC PEAIQIIKGK NIEKNPLFIE GNITVQDESA MLVAPSMELD
260 270 280 290 300
EESIVLDLCS APGGKTTHIS EIMNNKSKVY AYDVHQNKLS LIESNAKRLG
310 320 330 340 350
IKNIETDVGD AAVFNKKLKE KAHRVLMDVP CSGLGIIRKK PEIKWTKNER
360 370 380 390 400
EIKNIIAIQR KIMNNGASYL KEGGILLYST CTLNKEENEE NINWFLKKHK
410 420 430 440
NFKIEPLYYG DVDNIIYHKE GFVSILPNDK MDGFFIAKLK KC
Length:442
Mass (Da):50,981
Last modified:September 11, 2007 - v1
Checksum:iAB169982BDE07132
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000728 Genomic DNA. Translation: ABS40337.1.
RefSeqiWP_012100424.1. NC_009699.1.

Genome annotation databases

EnsemblBacteriaiABS40337; ABS40337; CLI_2568.
KEGGicbf:CLI_2568.
PATRICi19428079. VBICloBot15611_2481.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000728 Genomic DNA. Translation: ABS40337.1.
RefSeqiWP_012100424.1. NC_009699.1.

3D structure databases

ProteinModelPortaliA7GG93.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABS40337; ABS40337; CLI_2568.
KEGGicbf:CLI_2568.
PATRICi19428079. VBICloBot15611_2481.

Phylogenomic databases

HOGENOMiHOG000037300.
KOiK03500.
OMAiHIGLYQL.
OrthoDBiEOG6091D0.

Enzyme and pathway databases

BioCyciCBOT441772:GJIE-2533-MONOMER.

Family and domain databases

Gene3Di1.10.940.10. 1 hit.
3.40.50.150. 1 hit.
InterProiIPR001678. MeTrfase_RsmB/NOP2.
IPR006027. NusB_RsmB_TIM44.
IPR023267. RCMT.
IPR004573. rRNA_ssu_MeTfrase_B.
IPR029063. SAM-dependent_MTases.
[Graphical view]
PfamiPF01189. Methyltr_RsmB-F. 1 hit.
PF01029. NusB. 1 hit.
[Graphical view]
PRINTSiPR02008. RCMTFAMILY.
SUPFAMiSSF48013. SSF48013. 1 hit.
SSF53335. SSF53335. 1 hit.
TIGRFAMsiTIGR00563. rsmB. 1 hit.
PROSITEiPS51686. SAM_MT_RSMB_NOP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Langeland / NCTC 10281 / Type FImported.

Entry informationi

Entry nameiA7GG93_CLOBL
AccessioniPrimary (citable) accession number: A7GG93
Entry historyi
Integrated into UniProtKB/TrEMBL: September 11, 2007
Last sequence update: September 11, 2007
Last modified: May 11, 2016
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.