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A7GEJ3 (A7GEJ3_CLOBL) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
1-deoxy-D-xylulose-5-phosphate synthase HAMAP MF_00315
EC=2.2.1.7 HAMAP MF_00315
Alternative name(s):
1-deoxyxylulose-5-phosphate synthase HAMAP MF_00315
Gene names
Name:dxs HAMAP MF_00315 EMBL ABS42213.1
Ordered Locus Names:CLI_1945
OrganismClostridium botulinum (strain Langeland / NCTC 10281 / Type F) [Complete proteome] [HAMAP]
Taxonomic identifier441772 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length622 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) By similarity. HAMAP MF_00315 SAAS SAAS005477

Catalytic activity

Pyruvate + D-glyceraldehyde 3-phosphate = 1-deoxy-D-xylulose 5-phosphate + CO2. HAMAP MF_00315 SAAS SAAS005477

Cofactor

Binds 1 thiamine pyrophosphate per subunit By similarity. HAMAP MF_00315 SAAS SAAS005477

Pathway

Metabolic intermediate biosynthesis; 1-deoxy-D-xylulose 5-phosphate biosynthesis; 1-deoxy-D-xylulose 5-phosphate from D-glyceraldehyde 3-phosphate and pyruvate: step 1/1. HAMAP MF_00315 SAAS SAAS005477

Subunit structure

Homodimer By similarity. HAMAP MF_00315 SAAS SAAS005477

Sequence similarities

Belongs to the transketolase family. DXPS subfamily. HAMAP MF_00315

Sequences

Sequence LengthMass (Da)Tools
A7GEJ3 [UniParc].

Last modified September 11, 2007. Version 1.
Checksum: 5C6347F43E8F7F85

FASTA62268,687
        10         20         30         40         50         60 
MKMKNILDKY QDFDSIKSMS INELNQFSYE IREFLIDNVS KTGGHLASNL GVVELTLSIF 

        70         80         90        100        110        120 
NVFDLNKDKV IWDVGHQAYV HKILTGRKDK FNTLRQYGGL SGFPKICESP YDVFETGHSS 

       130        140        150        160        170        180 
TSISAALGMA RARDIKGENN KVIAVIGDGA LTGGMALEAL NDLGFNKTDL IIILNDNQMS 

       190        200        210        220        230        240 
IAENVGGMSS YLSKVRLDPT YNKLKKEVNN TLNKIPNVGK GMARSLERVK NGIKQMIVPG 

       250        260        270        280        290        300 
MLFENLGIKY LGPIDGHDIK ELSKVMKMAK NINGPVLIHT ITKKGKGYAY AEKKPDKFHG 

       310        320        330        340        350        360 
IGPFDCDSGE VNSKTCLTYS KVFGEELTKI AKEDKKVVAI TAAMKDGTGL RKFGETFPKR 

       370        380        390        400        410        420 
FFDVGIAEQH AVTLAAGIAT EGLKPVFAVY STFLQRAYDQ ILHDICIQNL PVVLGIDRAG 

       430        440        450        460        470        480 
IVGSDGETHQ GIFDLSYLSS LPNMTIMAPK CLEEMGIMLR WALNQNSPVA IRYPRGGDIK 

       490        500        510        520        530        540 
SLEMTPIKNM KKGKWEVICE EGDIAIIATG KMVQHAIIAR EKLKEYGIKS TIVNANFIKP 

       550        560        570        580        590        600 
IDKELIKNFV KKGYKIVTVE DNVIKGGFGS LVLQYISELK ANNTVLNLGF KDKFVPHGST 

       610        620 
DILYKIEGLD PEGIVKNIIK II

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References

[1]Brinkac L.M., Daugherty S., Dodson R.J., Madupu R., Brown J.L., Bruce D., Detter C., Munk C., Smith L.A., Smith T.J., White O., Brettin T.S.
Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000728 Genomic DNA. Translation: ABS42213.1.
RefSeqYP_001391203.1. NC_009699.1.

3D structure databases

ProteinModelPortalA7GEJ3.
ModBaseSearch...

Protein-protein interaction databases

STRINGA7GEJ3.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5402604.
GenomeReviewsGene locus CLI_1945 in contig CP000728_GR.
KEGGcbf:CLI_1945.
PATRIC19426837. VBICloBot15611_1860.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1154.
HOGENOMHBG571647.
OMARAHEFES.
ProtClustDBPRK05444.

Family and domain databases

HAMAPMF_00315. DXP_synth.
[Tree]
InterProIPR005477. Dxylulose-5-P_synthase.
IPR011766. TPP_enzyme-bd_C.
IPR009014. Transketo_C/Pyr-ferredox_oxred.
IPR015941. Transketolase-like_C.
IPR005475. Transketolase-like_Pyr-bd.
IPR020826. Transketolase_BS.
IPR005476. Transketolase_C.
IPR005474. Transketolase_N.
[Graphical view]
Gene3DG3DSA:3.40.50.920. Transketo_C_like. 1 hit.
KOK01662.
PfamPF02775. TPP_enzyme_C. 1 hit.
PF02779. Transket_pyr. 1 hit.
PF02780. Transketolase_C. 1 hit.
[Graphical view]
SMARTSM00861. Transket_pyr. 1 hit.
[Graphical view]
SUPFAMSSF52922. Transketo_C_like. 1 hit.
TIGRFAMsTIGR00204. Dxs. 1 hit.
PROSITEPS00801. TRANSKETOLASE_1. 1 hit.
PS00802. TRANSKETOLASE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA7GEJ3_CLOBL
AccessionPrimary (citable) accession number: A7GEJ3
Entry history
Integrated into UniProtKB/TrEMBL: September 11, 2007
Last sequence update: September 11, 2007
Last modified: December 14, 2011
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info