Lipoprotein - RUMGNA_00858 - Ruminococcus gnavus ATCC 29149

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A7AZY4 (A7AZY4_RUMGN) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 15. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Recommended name:
Lipoprotein PIRNR PIRNR002854

Gene names

ORF Names:

RUMGNA_00858 EMBL EDN78697.1

Organism

Ruminococcus gnavus ATCC 29149 EMBL EDN78697.1

Taxonomic identifier

Taxonomic lineage

Bacteria › Firmicutes › Clostridia › Clostridiales › Lachnospiraceae › Blautia ›

Protein attributes

Sequence length	278 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities	Belongs to the nlpA lipoprotein family. PIRNR PIRNR002854
Caution	The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data. EMBL EDN78697.1

Ontologies

Keywords
Ligand	Chloride PDB 4IB2
PTM	Lipoprotein PIRNR PIRNR002854 EMBL EDN78697.1
Technical term	3D-structure PDB 4IB2
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Sites

Binding site

1

Chloride 2; via amide nitrogen PDB 4IB2

Binding site

1

Chloride 3; via amide nitrogen PDB 4IB2

Binding site

1

Chloride 4; via amide nitrogen PDB 4IB2

Binding site

1

Chloride 1; via amide nitrogen PDB 4IB2

Sequences

Sequence

Length

Mass (Da)

Tools

A7AZY4 [UniParc].

Last modified September 11, 2007. Version 1.
Checksum: 34D0E8E84D60FA96
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278

30,289

        10         20         30         40         50         60 
MKKVTAIILT GILTLGVLTG CQSNSKAEEK GSSEDAKTIK VAASATPHAE ILEQAKSILK 

        70         80         90        100        110        120 
KEGYQLEVTV FDDYVQPNEV VESGEFDANY FQHVPYLESF NEEKGTHLVD AGDIHYEPFG 

       130        140        150        160        170        180 
IYPGTKKSLD EISEGDKIAV PNDTTNEARA LLLLQDNGII TLKDGAGLNA TVNDIEENPY 

       190        200        210        220        230        240 
NVEIVELEAA QVARVTGETA YVVLNGNYAL EAGYSVAKDA LAYEKSDSEA AKTYVNIIAV 

       250        260        270 
KEGNEKEEKI QALVKALKSD EIKEYIEKTY DGAVIPFE

References

[1]	Fulton L., Clifton S., Fulton B., Xu J., Minx P., Pepin K.H., Johnson M., Thiruvilangam P., Bhonagiri V., Nash W.E., Mardis E.R., Wilson R.K. Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: ATCC 29149 EMBL EDN78697.1.
[2]	"Draft genome sequence of Ruminococcus gnavus (ATCC 29149)." Sudarsanam P., Ley R., Guruge J., Turnbaugh P.J., Mahowald M., Liep D., Gordon J. Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: ATCC 29149 EMBL EDN78697.1.
[3]	"Crystal structure of a putative lipoprotein (RUMGNA_00858) from Ruminococcus gnavus ATCC 29149 at 1.76 A resolution." JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) Submitted (DEC-2012) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.76 ANGSTROMS) OF 28-278 IN COMPLEX WITH CHLORIDE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AAYG02000008 Genomic DNA. Translation: EDN78697.1.

3D structure databases

PDBe
RCSB-PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
4IB2	X-ray	1.76	A/B	28-278	[»]

ProteinModelPortal

ModBase

MobiDB

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

EDN78697; EDN78697; RUMGNA_00858.

PATRIC

29783838. VBIRumGna65643_0732.

Family and domain databases

InterPro

IPR004872. Lipoprotein_NlpA.
[Graphical view]

Pfam

PF03180. Lipoprotein_9. 1 hit.
[Graphical view]

PIRSF

PIRSF002854. MetQ. 1 hit.

ProtoNet

Entry information

Entry name

A7AZY4_RUMGN

Accession

Primary (citable) accession number: A7AZY4

Entry history

Integrated into UniProtKB/TrEMBL:	September 11, 2007
Last sequence update:	September 11, 2007
Last modified:	June 11, 2014
This is version 15 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info