A7A641 (A7A641_BIFAD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
30S ribosomal protein S4 HAMAP-Rule MF_01306

Gene names

Name:	rpsD HAMAP-Rule MF_01306 EMBL EDN83029.1
ORF Names:	BIFADO_01319 EMBL EDN83029.1

Organism

Bifidobacterium adolescentis L2-32 EMBL EDN83029.1

Taxonomic identifier

411481 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Bifidobacteriales › Bifidobacteriaceae › Bifidobacterium › Bifidobacterium adolescentis

Protein attributes

Sequence length	208 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit By similarity. HAMAP-Rule MF_01306 With S5 and S12 plays an important role in translational accuracy By similarity. HAMAP-Rule MF_01306
Subunit structure	Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity By similarity. HAMAP-Rule MF_01306
Sequence similarities	Belongs to the ribosomal protein S4P family. HAMAP-Rule MF_01306 RuleBase RU003699 Contains 1 S4 RNA-binding domain. HAMAP-Rule MF_01306 RuleBase RU003699
Caution	The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data. EMBL EDN83029.1

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding HAMAP-Rule MF_01306
Molecular function	Ribonucleoprotein Ribosomal protein HAMAP-Rule MF_01306 RuleBase RU003699 EMBL EDN83029.1
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	small ribosomal subunit Inferred from electronic annotation. Source: InterPro
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Regions
	Domain	95 – 155	61	S4 RNA-binding By similarity HAMAP-Rule MF_01306

Sequences

	Sequence		Length	Mass (Da)
	A7A641 [UniParc]. Last modified September 11, 2007. Version 1. Checksum: A1BE40B100571F78	FASTA	208	23,555
	10 20 30 40 50 60 MTNVQRSRRQ VRLSRALGIA LTPKAQRIFE KRPYAPGEHG RTRRRTESDY AVRLREKQRL 70 80 90 100 110 120 RAQYGISEKQ LRAAYEKGTH TAGQTGNAML TDLETRLDAL VLRAGFARTT AQARQFVVHR 130 140 150 160 170 180 HILVDGNIVD RPSYRVKPGQ TIQVKAKSQT MVPFQAAAEG VHRDVLPAVP GYLDVNLPSL 190 200 KATLTRKPEA EEIPVQVNIQ YVVEFYAR

References

[1]	Fulton L., Clifton S., Fulton B., Xu J., Minx P., Pepin K.H., Johnson M., Thiruvilangam P., Bhonagiri V., Nash W.E., Mardis E.R., Wilson R.K. Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: L2-32 EMBL EDN83029.1.
[2]	"Draft genome sequence of Bifidobacterium adolescentis (L2-32)." Sudarsanam P., Ley R., Guruge J., Turnbaugh P.J., Mahowald M., Liep D., Gordon J. Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: L2-32 EMBL EDN83029.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AAXD02000028 Genomic DNA. Translation: EDN83029.1.
3D structure databases
ProteinModelPortal	A7A641.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EDN83029; EDN83029; BIFADO_01319.
PATRIC	27188875. VBIBifAdo136061_1267.
Family and domain databases
Gene3D	1.10.1050.10. 1 hit. 3.10.290.10. 1 hit.
HAMAP	MF_01306_B. Ribosomal_S4_B.
InterPro	IPR022801. Ribosomal_S4/S9. IPR001912. Ribosomal_S4/S9_N. IPR005709. Ribosomal_S4_bac-type. IPR018079. Ribosomal_S4_CS. IPR002942. S4_RNA-bd. [Graphical view]
PANTHER	PTHR11831. PTHR11831. 1 hit.
Pfam	PF00163. Ribosomal_S4. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
TIGRFAMs	TIGR01017. rpsD_bact. 1 hit.
PROSITE	PS00632. RIBOSOMAL_S4. 1 hit. PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A7A641_BIFAD

Accession

Primary (citable) accession number: A7A641

Entry history

Integrated into UniProtKB/TrEMBL:	September 11, 2007
Last sequence update:	September 11, 2007
Last modified:	April 3, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)