A6YSL1 (A6YSL1_MAIZE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Chloroplast ribonuclease III domain protein EMBL ABR53724.1

Submitted name:
Putative uncharacterized protein EMBL ACF86105.1
Submitted name:
RNA binding protein EMBL ACG43171.1

Gene names

Name:

RNC1 EMBL ABR53724.1

Organism

Zea mays (Maize) EMBL ABR53724.1

Taxonomic identifier

4577 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › PACMAD clade › Panicoideae › Andropogoneae › Zea

Protein attributes

Sequence length	525 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Gene Ontology (GO)
Biological process	RNA processing Inferred from electronic annotation. Source: InterPro rRNA catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	RNA binding Inferred from electronic annotation. Source: InterPro ribonuclease III activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A6YSL1 [UniParc]. Last modified August 21, 2007. Version 1. Checksum: E3CA6753D5CD860A	FASTA	525	61,018
	10 20 30 40 50 60 MGPPAMAFQA LTLTPLPFSL HSSSRRVRVL AVAADQTPPP APPSEPANSP SRLLRELAQR 70 80 90 100 110 120 KKAVSPKKKH PPRRFILKPP LDDERLTRRF LSSPQLSLKA LPLLSSCLPS APLSTADRTW 130 140 150 160 170 180 MDEYLLEAKQ ALGYPLAPSE TLGEGDDCPA RHFDVLFYLA FQHLDPSSER TRMRHVRNGH 190 200 210 220 230 240 SRLWFLGQYV LELAFCEFFL QRYPRESPGP MRERVFALIG KKVLPRWLKA ASLHNLVFPY 250 260 270 280 290 300 DDLDKMIRKD REPPSKAVFW AIFGAIYLCF GMPEVYRVLF EAFGMDPDDE SCQPKLRRQL 310 320 330 340 350 360 EDVDYVSVEF EKRQLTWQDV AAYRPPPDAL FAHPRLFRAC VPPGMHRFRG NIWDFDSRPK 370 380 390 400 410 420 VMTTLGYPLP MNDRIPEITE ARNIELGLGL QLCFLHPSKH KFEHPRFCYE RLEYVGQKIQ 430 440 450 460 470 480 DLVMAERLLM KHLDAPGRWL AEKHRRTLMN KYCGRYLRDK HLQHYIIYGE TVQDRFEHNR 490 500 510 520 RLRNPSTTSV QQALHGLAYC VYGKPDVRRL MFEVFDFEQV QPKAV

References

[1]	"A Ribonuclease III Domain Protein Functions in Group II Intron Splicing in Maize Chloroplasts." Watkins K.P., Kroeger T.S., Cooke A.M., Williams-Carrier R.E., Friso G., Belcher S.E., van Wijk K.J., Barkan A. Plant Cell 19:2606-2623(2007) [PubMed: 17693527] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	"Maize Full-length cDNA Project." Yu Y., Currie J., Lomeli R., Angelova A., Collura K., Wissotski M., Campos D., Kudrna D., Golser W., Ashely E., Haller K., Descour A., Fernandes J., Zuccolo A., Soderlund C., Walbot V. Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: B73 EMBL ACF86105.1.
[3]	"Insights into corn genes derived from large-scale cDNA sequencing." Alexandrov N.N., Brover V.V., Freidin S., Troukhan M.E., Tatarinova T.V., Zhang H., Swaller T.J., Lu Y.-P., Bouck J., Flavell R.B., Feldmann K.A. Plant Mol. Biol. 69:179-194(2009) [PubMed: 18937034] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[4]	"Maize Full-length cDNA Project." Yu Y., Currie J., Lomeli R., Angelova A., Collura K., Wissotski M., Campos D., Kudrna D., Golser W., Ashely E., Haller K., Descour A., Fernandes J., Soderlund C., Walbot V. Submitted (FEB-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: B73 EMBL ACN29322.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	EF650835 mRNA. Translation: ABR53724.1. BT041100 mRNA. Translation: ACF86105.1. EU971053 mRNA. Translation: ACG43171.1. BT064625 mRNA. Translation: ACN29322.1.
RefSeq	NP_001106055.1. NM_001112585.1.
UniGene	Zm.27802.
3D structure databases
ProteinModelPortal	A6YSL1.
ModBase	Search...
Protein-protein interaction databases
DIP	DIP-48742N.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblPlants	GRMZM2G035820_T01; GRMZM2G035820_P01; GRMZM2G035820.
GeneID	100125654.
KEGG	zma:100125654.
Phylogenomic databases
PhylomeDB	A6YSL1.
Family and domain databases
InterPro	IPR000999. RNase_III. IPR011907. RNase_III_bac. [Graphical view]
Gene3D	G3DSA:1.10.1520.10. RNase_III. 2 hits.
PANTHER	PTHR11207. PTHR11207. 1 hit.
Pfam	PF00636. Ribonuclease_3. 1 hit. [Graphical view]
SMART	SM00535. RIBOc. 1 hit. [Graphical view]
SUPFAM	SSF69065. RNase_III. 2 hits.
PROSITE	PS50142. RNASE_3_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A6YSL1_MAIZE

Accession

Primary (citable) accession number: A6YSL1

Entry history

Integrated into UniProtKB/TrEMBL:	August 21, 2007
Last sequence update:	August 21, 2007
Last modified:	December 14, 2011
This is version 24 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)