A6WV97 (A6WV97_OCHA4) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma-54 factor PIRNR PIRNR000774

Gene names

Ordered Locus Names:

Oant_0170 EMBL ABS12901.1

Organism

Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) [Complete proteome] [HAMAP] EMBL ABS12901.1

Taxonomic identifier

439375 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Brucellaceae › Ochrobactrum › Ochrobactrum anthropi

Protein attributes

Sequence length	513 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. PIRNR PIRNR000774
Sequence similarities	Belongs to the sigma-54 factor family. PIRNR PIRNR000774

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Cellular component	DNA-directed RNA polymerase PIRNR PIRNR000774
Ligand	DNA-binding PIRNR PIRNR000774
Molecular function	Nucleotidyltransferase PIRNR PIRNR000774 Sigma factor PIRNR PIRNR000774 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW DNA-directed RNA polymerase activity Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A6WV97 [UniParc]. Last modified August 21, 2007. Version 1. Checksum: BD27CDD2AB6149DD	FASTA	513	56,589
	10 20 30 40 50 60 MALSPKLDFR QSQSLVMTPQ LMQSIKLLQM THMELEQFLD IEIEKNPLLD RIEAANDDFS 70 80 90 100 110 120 GAESARDGAE TGGEDAASDD LSDGDWFKTG ASDNAENLSS TFDSSLENIF PDDPGRFDEI 130 140 150 160 170 180 GPDLAAQWKS SVGDGYVSGG SYDIDQVTAS RISLSEHVAE QITLTFSKAA DRFIATALAD 190 200 210 220 230 240 ALDESGYLRV DIVGLAQNLG VETVEIEHVL GVMQDFDPAG LFARDLRECL AIQLRLKDRF 250 260 270 280 290 300 DPAMEVLIDN LDLLARRDFA TLKKLCGVDQ ADILDMLTEI RMLDPKPGAL FEISVADAIV 310 320 330 340 350 360 PDALVTPSRD GGWTIELNAA AMPRLIVNNE YYAEVSTSVK AEEKAFLSDC MQTANWLVRS 370 380 390 400 410 420 LDQRARTILK VTQEIVRQQD GFLRHGVTHL KPLNLRTVAD AVGMHESTIS RVTANKFMAT 430 440 450 460 470 480 PRGVFELRYF FTASIASSEG GDAHSSESVR HRIRQMIDAE KSDDVLSDDA IVDALKKDGV 490 500 510 DIARRTVAKY RESMNIASSV QRRREKKARL SAS

References

[1]

"Genome of Ochrobactrum anthropi ATCC 49188 T, a versatile opportunistic pathogen and symbiont of several eukaryotic hosts." Chain P.S., Lang D.M., Comerci D.J., Malfatti S.A., Vergez L.M., Shin M., Ugalde R.A., Garcia E., Tolmasky M.E. J. Bacteriol. 193:4274-4275(2011) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 49188 / DSM 6882 / NCTC 12168.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000758 Genomic DNA. Translation: ABS12901.1.
RefSeq	YP_001368730.1. NC_009667.1.
3D structure databases
ProteinModelPortal	A6WV97.
ModBase	Search...
Protein-protein interaction databases
STRING	439375.Oant_0170.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABS12901; ABS12901; Oant_0170.
GeneID	5380788.
KEGG	oan:Oant_0170.
PATRIC	20465305. VBIOchAnt73124_0181.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1508.
HOGENOM	HOG000071904.
KO	K03092.
OMA	RFDPAMQ.
ProtClustDB	PRK05932.
Enzyme and pathway databases
BioCyc	OANT439375:GJIT-172-MONOMER.
Family and domain databases
InterPro	IPR000394. RNA_pol_sigma_54. IPR007046. RNA_pol_sigma_54_core-bd. IPR007634. RNA_pol_sigma_54_DNA-bd. [Graphical view]
Pfam	PF00309. Sigma54_AID. 1 hit. PF04963. Sigma54_CBD. 1 hit. PF04552. Sigma54_DBD. 1 hit. [Graphical view]
PIRSF	PIRSF000774. RpoN. 1 hit.
PRINTS	PR00045. SIGMA54FCT.
TIGRFAMs	TIGR02395. rpoN_sigma. 1 hit.
PROSITE	PS00717. SIGMA54_1. 1 hit. PS00718. SIGMA54_2. 1 hit. PS50044. SIGMA54_3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A6WV97_OCHA4

Accession

Primary (citable) accession number: A6WV97

Entry history

Integrated into UniProtKB/TrEMBL:	August 21, 2007
Last sequence update:	August 21, 2007
Last modified:	May 1, 2013
This is version 40 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)