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A6WHK9 (RLMF_SHEB8) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribosomal RNA large subunit methyltransferase F
EC=2.1.1.181
Alternative name(s):
23S rRNA mA1618 methyltransferase
rRNA adenine N-6-methyltransferase
Gene names
Name:rlmF
Ordered Locus Names:Shew185_0127
OrganismShewanella baltica (strain OS185) [Complete proteome] [HAMAP]
Taxonomic identifier402882 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella

Protein attributes

Sequence length365 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Specifically methylates the adenine in position 1618 of 23S rRNA By similarity. HAMAP MF_01848

Catalytic activity

S-adenosyl-L-methionine + adenine(1618) in 23S rRNA = S-adenosyl-L-homocysteine + rRNA containing N(6)-methyladenine(1618) in 23S rRNA. HAMAP MF_01848

Subcellular location

Cytoplasm Potential HAMAP MF_01848.

Sequence similarities

Belongs to the methyltransferase superfamily. METTL16/rlmF family.

Ontologies

Keywords
   Biological processrRNA processing
   Cellular componentCytoplasm
   LigandS-adenosyl-L-methionine
   Molecular functionMethyltransferase
Transferase
   Technical termComplete proteome
Gene Ontology (GO)
   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionrRNA (adenine-N6-)-methyltransferase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 365365Ribosomal RNA large subunit methyltransferase F HAMAP MF_01848
PRO_0000349952

Sequences

Sequence LengthMass (Da)Tools
A6WHK9 [UniParc].

Last modified August 21, 2007. Version 1.
Checksum: 7EE49939F40C6BC0

FASTA36540,268
        10         20         30         40         50         60 
MSKPAVKSVQ SATAKTATRA VNIRQKVKAP KQAKPEAKGR VRPSKDKPRV EIKKALHPRN 

        70         80         90        100        110        120 
AHLNGYDFPA LISAFPQLKT FVRPTPYGAL SVDFADPLAV KTLNAALLKH HYGIGSWNIP 

       130        140        150        160        170        180 
EGALCPPIPG RVDYVHYVAD LLAEGDKSCA MDKARVLDIG TGANGIYPIL GCQVYGWQYV 

       190        200        210        220        230        240 
ASDINAHSLT NVQSIIEQNP VLQGRISLRL QPDDKAVFKG VIQAEERFEL TLCNPPFHAS 

       250        260        270        280        290        300 
MAEASEGTKR KVNNLQLNRG SSVKAAPKLN FGGQAAELWC QGGERQFLAT MIRESQMFAD 

       310        320        330        340        350        360 
QCLWFTSLVS KQENLKPCYQ ALAQLNVDTV KTIEMQQGNK ITRVLAWSFQ SAAKRKLWRA 


EHLAN

« Hide

References

[1]"Complete sequence of chromosome of Shewanella baltica OS185."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Mikhailova N., Brettar I., Rodrigues J., Konstantinidis K., Tiedje J., Richardson P.
Submitted (JUL-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: OS185.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000753 Genomic DNA. Translation: ABS06298.1.
RefSeqYP_001364361.1. NC_009665.1.

3D structure databases

ProteinModelPortalA6WHK9.
ModBaseSearch...

Protein-protein interaction databases

STRINGA6WHK9.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5372114.
GenomeReviewsGene locus Shew185_0127 in contig CP000753_GR.
KEGGsbm:Shew185_0127.
PATRIC23456713. VBISheBal127872_0219.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3129.
HOGENOMHBG747880.
OMAWSFVGSD.
ProtClustDBPRK11727.

Enzyme and pathway databases

BioCycSBAL402882:SHEW185_0127-MONOMER.

Family and domain databases

HAMAPMF_01848. 23SrRNA_methyltr_F.
[Tree]
InterProIPR016909. rRNA_lsu_methyltransferase_F.
IPR010286. SAM-Mtase_prd.
[Graphical view]
KOK06970.
PANTHERPTHR13393. DUF890. 1 hit.
PfamPF05971. Methyltransf_10. 1 hit.
[Graphical view]
PIRSFPIRSF029038. Mtase_YbiN_prd. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRLMF_SHEB8
AccessionPrimary (citable) accession number: A6WHK9
Entry history
Integrated into UniProtKB/Swiss-Prot: September 2, 2008
Last sequence update: August 21, 2007
Last modified: January 25, 2012
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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