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A6WF44 (A6WF44_KINRD) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Beta-galactosidase PIRNR PIRNR001084
Short name=Beta-gal PIRNR PIRNR001084
EC=3.2.1.23 PIRNR PIRNR001084
Gene names
Ordered Locus Names:Krad_3970
OrganismKineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) [Complete proteome] [HAMAP] EMBL ABS05433.1
Taxonomic identifier266940 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Kineosporiineae › Kineosporiaceae › Kineococcus

Protein attributes

Sequence length678 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides. PIRNR PIRNR001084

Sequence similarities

Belongs to the glycosyl hydrolase 42 family. PIRNR PIRNR001084

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1521Proton donor By similarity PIRSR PIRSR001084-1
Active site3111Nucleophile By similarity PIRSR PIRSR001084-1
Metal binding1171Zinc By similarity PIRSR PIRSR001084-3
Metal binding1601Zinc By similarity PIRSR PIRSR001084-3
Metal binding1621Zinc By similarity PIRSR PIRSR001084-3
Binding site1131Substrate By similarity PIRSR PIRSR001084-2
Binding site1511Substrate By similarity PIRSR PIRSR001084-2
Binding site3191Substrate By similarity PIRSR PIRSR001084-2

Sequences

Sequence LengthMass (Da)Tools
A6WF44 [UniParc].

Last modified August 21, 2007. Version 1.
Checksum: DB0376970619D877

FASTA67873,370
        10         20         30         40         50         60 
MQRWSDGAAG LVFGSDYNPE QWPAEVRADD VRLMQRAGVN LVSVGIFSWG LLEPRPGRFD 

        70         80         90        100        110        120 
FGWFDAVLDD LHAGGIGVSL ATATASPPAW LGELHPEVLP VDADGHRVVF GSRQSWCPSS 

       130        140        150        160        170        180 
PVYRERSLAL VEALAERYGQ HPALRLWHVS NELGCHNARC YCDVSAAAFR TWLADRYPDV 

       190        200        210        220        230        240 
AALNDAWATA FWSQHYTSFE QVQVPARTSS FHNPAQALDF ARFSSDELLG QHLAEKDVLR 

       250        260        270        280        290        300 
RVTPEVPVTT NFMIGSQLNP MDYGRWAREQ DVVANDHYLI HGNYDDPRAE LAYSADLTRG 

       310        320        330        340        350        360 
TASGQPWLLM EHSTSAVNWQ PVNVAKPAGE MLQDSLSHVA RGADGICFFQ WRASAGGAEQ 

       370        380        390        400        410        420 
WHSALVPHAG EDTERFREVT ELGALLGRLG ELRGSTTSND VAILVDWQNA WAMESETLPS 

       430        440        450        460        470        480 
RRVGHADLAL RVHGLLREAR TGADVVPVGA HPHDLAEVLA GYRVLVVPTL YLCDDTTAAA 

       490        500        510        520        530        540 
VTAAAESGTH VLVTYFSGIV DETARVRLGG YPGAFRDLLG IRVEEFHPLP DGVAGELDDA 

       550        560        570        580        590        600 
TVGDVWSEIA TADDDVEVLS RYAEGATAGC PALTRRDLPS GARAWYLGTS LDDEALAGLL 

       610        620        630        640        650        660 
HAVCTTAGVA PVAEASGPVD VVRRRAADGR SWLFALNHGE EPATVTVRGF DLVAEVDVDG 

       670 
LDLEPGASAV VRELGPGD

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References

[1]"Complete sequence of chromosome of Kineococcus radiotolerans SRS30216."
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Lykidis A., Bagwell C.E., Shimkets L., Berry C.J., Fliermans C., Richardson P.
Submitted (JUL-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-149 / DSM 14245 / SRS30216.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000750 Genomic DNA. Translation: ABS05433.1.
RefSeqYP_001363697.1. NC_009664.2.

3D structure databases

ProteinModelPortalA6WF44.
ModBaseSearch...

Protein-protein interaction databases

STRINGA6WF44.

Protein family/group databases

CAZyGH42. Glycoside Hydrolase Family 42.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5337673.
GenomeReviewsGene locus Krad_3970 in contig CP000750_GR.
KEGGkra:Krad_3970.
NMPDRfig|266940.1.peg.3371.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1874.
HOGENOMHBG476453.
OMAPLAWFRA.

Family and domain databases

InterProIPR013739. Beta_galactosidase_C.
IPR013738. Beta_galactosidase_Trimer.
IPR003476. Glyco_hydro_42.
IPR013529. Glyco_hydro_42_N.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
Gene3DG3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
KOK12308.
PfamPF02449. Glyco_hydro_42. 1 hit.
PF08533. Glyco_hydro_42C. 1 hit.
PF08532. Glyco_hydro_42M. 1 hit.
[Graphical view]
PIRSFPIRSF001084. B-galactosidase. 1 hit.
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA6WF44_KINRD
AccessionPrimary (citable) accession number: A6WF44
Entry history
Integrated into UniProtKB/TrEMBL: August 21, 2007
Last sequence update: August 21, 2007
Last modified: December 14, 2011
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info