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A6W0E3 (A6W0E3_MARMS) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Isocitrate dehydrogenase, NADP-dependent EMBL ABR72172.1
EC=1.1.1.42 EMBL ABR72172.1
Gene names
Ordered Locus Names:Mmwyl1_3267
OrganismMarinomonas sp. (strain MWYL1) [Complete proteome] [HAMAP] EMBL ABR72172.1
Taxonomic identifier400668 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Oceanospirillales › Marinomonas

Protein attributes

Sequence length740 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 1 magnesium or manganese ion per subunit By similarity. PIRSR PIRSR009407-3

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 3232 Potential EMBL ABR72172.1
Chain33 – 740708 Potential EMBL ABR72172.1
PRO_5000259612

Regions

Region133 – 1408Substrate binding By similarity PIRSR PIRSR009407-2

Sites

Metal binding3501Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5481Magnesium or manganese By similarity PIRSR PIRSR009407-3
Metal binding5521Magnesium or manganese By similarity PIRSR PIRSR009407-3
Binding site1461Substrate By similarity PIRSR PIRSR009407-2
Binding site5471Substrate By similarity PIRSR PIRSR009407-2
Site2551Critical for catalysis By similarity PIRSR PIRSR009407-1
Site4201Critical for catalysis By similarity PIRSR PIRSR009407-1

Sequences

Sequence LengthMass (Da)Tools
A6W0E3 [UniParc].

Last modified August 21, 2007. Version 1.
Checksum: 5DD4AB4FAE035A50

FASTA74081,924
        10         20         30         40         50         60 
MSTKQTIYYT FTDEAPALAT ASLLPIFGAF AKEADIELKL TDISLASRVI AAFSDRLPAD 

        70         80         90        100        110        120 
KQAEDGLKFL GDLTADPQAN IVKLPNISAS LPQLNATIKE LNAEGYGLPE YPENPQTDEE 

       130        140        150        160        170        180 
KEVQARYSKV LGSAVNPVLR QGNSDRRAPA AVKGYARKNP HSMGKWKKTS ISHADYMRDG 

       190        200        210        220        230        240 
DFYSSEQSVT MDSAQTVRLE FVGTDGSVEV KKSLPLLAGE IIDSMNISTK KLRAFFEATM 

       250        260        270        280        290        300 
QEAKEDNIMW SVHLKATMMK VSHPIVFGHA VTVFYKDVFE KYGELFKEIG VNPNNGLGSV 

       310        320        330        340        350        360 
YDKIQSLPEA KQEEIKQAIQ DVYKTRPELA MVDSDKGITN LHVPSDVIVD ASMPAMIRNS 

       370        380        390        400        410        420 
GKMWGRDGKA HDAKAVIPDS TYARIYQETI NFCKTNGAFD PVTMGTVPNV GLMAQKAEEY 

       430        440        450        460        470        480 
GSHDKTYEMK ADGVMRVVDA NDNILMQHNV EKGDIWRACQ TKDAAIRDWV KLGVTRARQS 

       490        500        510        520        530        540 
DTPAVFWLED ERAHDNELRK KVETYLKDHD TSGLDIRIMP YNEAIRFSME RIIRGKDTIS 

       550        560        570        580        590        600 
VTGNILRDYL TDLFPILELG TSAKMLSIVP MLNGGGMYET GAGGSAPKHV QQLMEENYLR 

       610        620        630        640        650        660 
WDSLGEFLAV AVSFEELGIK HNNEKAKILA KCLDKATGKL LDTNKSPSRK VGEIDNRGSH 

       670        680        690        700        710        720 
FYLALYWAQE LAAQTEDANL AAKFAPLAKQ LADNEDKIVA ELAAVQGKPS GLSGYYHMDL 

       730        740 
NEVAKIMRPS ATFNTALATL

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References

[1]"Complete sequence of Marinomonas sp. MWYL1."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Kiss H., Brettin T., Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N. expand/collapse author list , Kim E., Johnston A.W.B., Todd J.D., Rogers R., Wexler M., Bond P.L., Li Y., Richardson P.
Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: MWYL1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000749 Genomic DNA. Translation: ABR72172.1.
RefSeqYP_001342107.1. NC_009654.1.

3D structure databases

ProteinModelPortalA6W0E3.
SMRA6W0E3. Positions 7-740.
ModBaseSearch...

Protein-protein interaction databases

STRING400668.Mmwyl1_3267.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABR72172; ABR72172; Mmwyl1_3267.
GeneID5368630.
KEGGmmw:Mmwyl1_3267.
PATRIC22470073. VBIMarSp124341_3381.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2838.
HOGENOMHOG000240860.
KOK00031.
OMAPRTMGTV.
ProtClustDBCLSK867411.

Enzyme and pathway databases

BioCycMSP400668:GHKD-3378-MONOMER.

Family and domain databases

Gene3D3.40.718.10. 3 hits.
InterProIPR004436. Isocitrate_DH_NADP_mono.
IPR024084. IsoPropMal-DH-like_dom.
[Graphical view]
PfamPF03971. IDH. 1 hit.
[Graphical view]
PIRSFPIRSF009407. IDH_monmr. 1 hit.
TIGRFAMsTIGR00178. monomer_idh. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA6W0E3_MARMS
AccessionPrimary (citable) accession number: A6W0E3
Entry history
Integrated into UniProtKB/TrEMBL: August 21, 2007
Last sequence update: August 21, 2007
Last modified: May 1, 2013
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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