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A6VP15

- GLGB_ACTSZ

UniProt

A6VP15 - GLGB_ACTSZ

Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Actinobacillus succinogenes (strain ATCC 55618 / 130Z)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 58 (01 Oct 2014)
      Sequence version 1 (21 Aug 2007)
      Previous versions | rss
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    Functioni

    Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

    Catalytic activityi

    Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei405 – 4051NucleophileUniRule annotation
    Active sitei458 – 4581Proton donorUniRule annotation

    GO - Molecular functioni

    1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
    2. cation binding Source: InterPro
    3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

    GO - Biological processi

    1. glycogen biosynthetic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Keywords - Biological processi

    Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

    Enzyme and pathway databases

    BioCyciASUC339671:GHDX-1419-MONOMER.
    UniPathwayiUPA00164.

    Protein family/group databases

    CAZyiCBM48. Carbohydrate-Binding Module Family 48.
    GH13. Glycoside Hydrolase Family 13.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
    Alternative name(s):
    1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
    Alpha-(1->4)-glucan branching enzymeUniRule annotation
    Glycogen branching enzymeUniRule annotation
    Short name:
    BEUniRule annotation
    Gene namesi
    Name:glgBUniRule annotation
    Ordered Locus Names:Asuc_1352
    OrganismiActinobacillus succinogenes (strain ATCC 55618 / 130Z)
    Taxonomic identifieri339671 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPasteurellalesPasteurellaceaeActinobacillus
    ProteomesiUP000001114: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 8298291,4-alpha-glucan branching enzyme GlgBPRO_1000072735Add
    BLAST

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Protein-protein interaction databases

    STRINGi339671.Asuc_1352.

    Structurei

    3D structure databases

    ProteinModelPortaliA6VP15.
    SMRiA6VP15. Positions 117-725.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0296.
    HOGENOMiHOG000283037.
    KOiK00700.
    OMAiRSISKRI.
    OrthoDBiEOG6JX7GT.

    Family and domain databases

    Gene3Di2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPiMF_00685. GlgB.
    InterProiIPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000463. GlgB. 1 hit.
    SUPFAMiSSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 2 hits.
    TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A6VP15-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTTFVTQDTI NAFFDGRHAD PFAVLGMHET DNGIEIRALL PDAGRVVVID    50
    KETQDEVCEL SRIDERGFFA GIMPQRNSFF NYQLQVSWGN EVLRIEDPYR 100
    FHPMIQELDN WLLAEGSHLR PYEVLGAHFM ECDHVSGVNF RLWAPNAKRV 150
    SVVGDFNYWD GRRHPMRFHQ ASGVWELFIP KVALGDLYKF ELLDNNNRLR 200
    LKSDPYAFAA QLRPDTASQI SVLPEIQEMT AARRKANQLD QPISIYEVHL 250
    GSWRRNLANN FWLNYDEIAD ELIPYVKEMG FTHIELLPIS EFPFDGSWGY 300
    QPIGLYAPTS RFGSPEGFKR FVDKAHAAGI NVILDWVPGH FPSDTHGLAT 350
    FDGTALYEHA DPKEGYHQDW NTLIYNYGRH EVKNYLSGNA LYWVERFGLD 400
    GIRVDAVASM IYRDYSRRDG EWIPNQYGGR ENLEAIEFLK HTNYILGTEH 450
    PGVMCVAEES TAFAGVTLPP ENGGLGFNFK WNMGWMNDTL SYMKLDPIYR 500
    QYNHSKLTFG MLYQYSENFV LPLSHDEVVH GKCSLLDKMP GDTWQKFANL 550
    RAYYGYMWAY PGKKLLFMGN EFAQGREWNY QESLDWYLLD EFHGGGWHSG 600
    VQRLVKDLNK TYQKQSALYQ LDTKPEGFEW LVVDDAQNSV FVFERRNAKG 650
    EPLIVVSNFT PVPRENYRFG VNVAGSYEEI LNTDADIYKG SGLNNGGVID 700
    SEEIESHGKT QSISITVPPL ATVYFKLKSA RKVASPRKVT KKKTTADGAE 750
    ATAKNASASK ATKVSTKKTV KSSEAKPVKA ATKSSVTKVA TKKSTDKPTA 800
    KATRTKKATV TKTAKASAKT TAKKTKDNA 829
    Length:829
    Mass (Da):94,021
    Last modified:August 21, 2007 - v1
    Checksum:i5BE0A3BD25EFE7A5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000746 Genomic DNA. Translation: ABR74712.1.
    RefSeqiWP_012073089.1. NC_009655.1.
    YP_001344647.1. NC_009655.1.

    Genome annotation databases

    EnsemblBacteriaiABR74712; ABR74712; Asuc_1352.
    GeneIDi5349403.
    KEGGiasu:Asuc_1352.
    PATRICi20761076. VBIActSuc117883_1415.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000746 Genomic DNA. Translation: ABR74712.1 .
    RefSeqi WP_012073089.1. NC_009655.1.
    YP_001344647.1. NC_009655.1.

    3D structure databases

    ProteinModelPortali A6VP15.
    SMRi A6VP15. Positions 117-725.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 339671.Asuc_1352.

    Protein family/group databases

    CAZyi CBM48. Carbohydrate-Binding Module Family 48.
    GH13. Glycoside Hydrolase Family 13.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABR74712 ; ABR74712 ; Asuc_1352 .
    GeneIDi 5349403.
    KEGGi asu:Asuc_1352.
    PATRICi 20761076. VBIActSuc117883_1415.

    Phylogenomic databases

    eggNOGi COG0296.
    HOGENOMi HOG000283037.
    KOi K00700.
    OMAi RSISKRI.
    OrthoDBi EOG6JX7GT.

    Enzyme and pathway databases

    UniPathwayi UPA00164 .
    BioCyci ASUC339671:GHDX-1419-MONOMER.

    Family and domain databases

    Gene3Di 2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPi MF_00685. GlgB.
    InterProi IPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000463. GlgB. 1 hit.
    SUPFAMi SSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 2 hits.
    TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "A genomic perspective on the potential of Actinobacillus succinogenes for industrial succinate production."
      McKinlay J.B., Laivenieks M., Schindler B.D., McKinlay A.A., Siddaramappa S., Challacombe J.F., Lowry S.R., Clum A., Lapidus A.L., Burkhart K.B., Harkins V., Vieille C.
      BMC Genomics 11:680-680(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 55618 / 130Z.

    Entry informationi

    Entry nameiGLGB_ACTSZ
    AccessioniPrimary (citable) accession number: A6VP15
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 26, 2008
    Last sequence update: August 21, 2007
    Last modified: October 1, 2014
    This is version 58 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3