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Protein
Submitted name:

Alpha amylase catalytic region

Gene

Asuc_0315

Organism
Actinobacillus succinogenes (strain ATCC 55618 / 130Z)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciASUC339671:GHDX-333-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase catalytic regionImported
Gene namesi
Ordered Locus Names:Asuc_0315Imported
OrganismiActinobacillus succinogenes (strain ATCC 55618 / 130Z)Imported
Taxonomic identifieri339671 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPasteurellalesPasteurellaceaeActinobacillus
ProteomesiUP000001114 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919 PotentialImportedAdd
BLAST
Chaini20 – 685666 PotentialImportedPRO_5000258695Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi339671.Asuc_0315.

Structurei

3D structure databases

ProteinModelPortaliA6VL46.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

SignalImported

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000273912.
KOiK01176.
OMAiFNWHNAT.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A6VL46-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKSLLYFCL FTSSVSFAQG WQHTHFRYFN DSAETNLFQS QTALEKGYYP
60 70 80 90 100
LTFIFDNQCY QPQSAMKLNQ TVSLIPCFGE APHIRLFRRG NYIAQIDMRS
110 120 130 140 150
GTPTLKIGVQ QQQSSDKNAL KSCPRWNKQP IEIDVSSTFA EGESVRDFYS
160 170 180 190 200
NQIAEVKNGK VIMMPAANAD GLILLEKSAV EKTDVFDWKN ATVYFVLTDR
210 220 230 240 250
FHNGNPANDN SYGRHKDGMQ EIGTFHGGDL QGLTEKLDYL QQLGVNALWI
260 270 280 290 300
SSPLEQMHGW VGGGNKGDFP HYGYHGYYHL DWTKLDANMG TESDLRNLIQ
310 320 330 340 350
QAHRRGIRVL FDIVMNHTGY ATLADMQEFK FGDFYLKPEE ITAVLGEKWT
360 370 380 390 400
NWQPEKGQNW HSFNDFIKFG DSKAWQNWWG KDWVRADIGD YDSPKFDDLR
410 420 430 440 450
MSLSALPDLK TESESAVELP RFFQHKNTNA KKLDNAKVRD YLIVWLTDWV
460 470 480 490 500
RRYGVDGFRV DTAKHVEKST WLALKQASQR ALKEWQQKNP KESFGDDFWM
510 520 530 540 550
TGEAWGHGVF KSDYYQNGFD AMINFDFQDQ AKNALDCFAR IEPVYQEMNN
560 570 580 590 600
KLKDFNVLSY LSSHDTRLFF HSDSERNVAK QKIAANLLLL SSGAVQIYYG
610 620 630 640 650
DESGREFGAT GSDPVQGTRS DMNWTDLQKD RSKQALHQHW QKLAQFRQRH
660 670 680
QAVGAGVHQT LKSESYFAFS RTLGEDKVMV VWAGN
Length:685
Mass (Da):78,800
Last modified:August 21, 2007 - v1
Checksum:iF4825B25B3264E76
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000746 Genomic DNA. Translation: ABR73693.1.
RefSeqiWP_011978968.1. NC_009655.1.
YP_001343628.1. NC_009655.1.

Genome annotation databases

EnsemblBacteriaiABR73693; ABR73693; Asuc_0315.
KEGGiasu:Asuc_0315.
PATRICi20758834. VBIActSuc117883_0341.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000746 Genomic DNA. Translation: ABR73693.1.
RefSeqiWP_011978968.1. NC_009655.1.
YP_001343628.1. NC_009655.1.

3D structure databases

ProteinModelPortaliA6VL46.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi339671.Asuc_0315.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABR73693; ABR73693; Asuc_0315.
KEGGiasu:Asuc_0315.
PATRICi20758834. VBIActSuc117883_0341.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000273912.
KOiK01176.
OMAiFNWHNAT.
OrthoDBiEOG65QWH3.

Enzyme and pathway databases

BioCyciASUC339671:GHDX-333-MONOMER.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. "A genomic perspective on the potential of Actinobacillus succinogenes for industrial succinate production."
    McKinlay J.B., Laivenieks M., Schindler B.D., McKinlay A.A., Siddaramappa S., Challacombe J.F., Lowry S.R., Clum A., Lapidus A.L., Burkhart K.B., Harkins V., Vieille C.
    BMC Genomics 11:680-680(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 55618 / 130ZImported.

Entry informationi

Entry nameiA6VL46_ACTSZ
AccessioniPrimary (citable) accession number: A6VL46
Entry historyi
Integrated into UniProtKB/TrEMBL: August 21, 2007
Last sequence update: August 21, 2007
Last modified: April 1, 2015
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.