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Protein

30S ribosomal protein S4e

Gene

rps4e

Organism
Methanococcus maripaludis (strain C7 / ATCC BAA-1331)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciMMAR426368:GHHL-664-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S4eUniRule annotation
Gene namesi
Name:rps4eUniRule annotation
Ordered Locus Names:MmarC7_0656
OrganismiMethanococcus maripaludis (strain C7 / ATCC BAA-1331)
Taxonomic identifieri426368 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanococciMethanococcalesMethanococcaceaeMethanococcus
Proteomesi
  • UP000002298 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 24424430S ribosomal protein S4ePRO_1000081340Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi426368.MmarC7_0656.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini43 – 10664S4 RNA-bindingUniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ribosomal protein S4e family.UniRule annotation
Contains 1 S4 RNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04093. Archaea.
COG1471. LUCA.
HOGENOMiHOG000231324.
KOiK02987.
OMAiHIQLNLH.

Family and domain databases

HAMAPiMF_00485. Ribosomal_S4e. 1 hit.
InterProiIPR000876. Ribosomal_S4e.
IPR013845. Ribosomal_S4e_central_region.
IPR013843. Ribosomal_S4e_N.
IPR018199. Ribosomal_S4e_N_CS.
IPR002942. S4_RNA-bd.
[Graphical view]
PANTHERiPTHR11581. PTHR11581. 1 hit.
PfamiPF00900. Ribosomal_S4e. 1 hit.
PF08071. RS4NT. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
PIRSFiPIRSF002116. Ribosomal_S4. 1 hit.
ProDomiPD002667. Ribosomal_S4e_central. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS00528. RIBOSOMAL_S4E. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A6VGZ7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAIKGPRKHL KRLAAPANWQ LPRKVKAFTV RPSPGPHSMD KSLPLLLVVR
60 70 80 90 100
DVLKYADNAR EAKKIIQTGK ILIDGLKRKE YKHPAGLMDV LSIPEMDENY
110 120 130 140 150
LVLFDESGRI SLKKTDKTDA KLCKIVNKTV IKGGHIQLNL HDGRNQIVKV
160 170 180 190 200
SDATKAEEDV YKTGDSVLVS IPEQSIVGHV AFGEGKLAYV TGGKHVGEFA
210 220 230 240
KIVEVENRAL YSDIVTLENK DGEKFKTVKP YVFIVGQDEP VISM
Length:244
Mass (Da):27,093
Last modified:August 21, 2007 - v1
Checksum:i79B82D677FAA8367
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000745 Genomic DNA. Translation: ABR65723.1.
RefSeqiWP_011977046.1. NC_009637.1.

Genome annotation databases

EnsemblBacteriaiABR65723; ABR65723; MmarC7_0656.
GeneIDi5328427.
KEGGimmz:MmarC7_0656.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000745 Genomic DNA. Translation: ABR65723.1.
RefSeqiWP_011977046.1. NC_009637.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi426368.MmarC7_0656.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABR65723; ABR65723; MmarC7_0656.
GeneIDi5328427.
KEGGimmz:MmarC7_0656.

Phylogenomic databases

eggNOGiarCOG04093. Archaea.
COG1471. LUCA.
HOGENOMiHOG000231324.
KOiK02987.
OMAiHIQLNLH.

Enzyme and pathway databases

BioCyciMMAR426368:GHHL-664-MONOMER.

Family and domain databases

HAMAPiMF_00485. Ribosomal_S4e. 1 hit.
InterProiIPR000876. Ribosomal_S4e.
IPR013845. Ribosomal_S4e_central_region.
IPR013843. Ribosomal_S4e_N.
IPR018199. Ribosomal_S4e_N_CS.
IPR002942. S4_RNA-bd.
[Graphical view]
PANTHERiPTHR11581. PTHR11581. 1 hit.
PfamiPF00900. Ribosomal_S4e. 1 hit.
PF08071. RS4NT. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
PIRSFiPIRSF002116. Ribosomal_S4. 1 hit.
ProDomiPD002667. Ribosomal_S4e_central. 1 hit.
[Graphical view] [Entries sharing at least one domain]
PROSITEiPS00528. RIBOSOMAL_S4E. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRS4E_METM7
AccessioniPrimary (citable) accession number: A6VGZ7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: August 21, 2007
Last modified: May 11, 2016
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.