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A6V648

- A6V648_PSEA7

UniProt

A6V648 - A6V648_PSEA7

Protein
Submitted name:

DNA ligase D

Gene

ligD

Organism
Pseudomonas aeruginosa (strain PA7)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 44 (01 Oct 2014)
      Sequence version 1 (21 Aug 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: RefGenome
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA ligation Source: RefGenome
    2. DNA recombination Source: InterPro
    3. lagging strand elongation Source: RefGenome
    4. nucleotide-excision repair Source: RefGenome

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPAER381754:GHMY-3173-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Name:ligDImported
    Ordered Locus Names:PSPA7_3173Imported
    OrganismiPseudomonas aeruginosa (strain PA7)Imported
    Taxonomic identifieri381754 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000001582: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. chromosome Source: RefGenome

    Interactioni

    Protein-protein interaction databases

    STRINGi381754.PSPA7_3173.

    Structurei

    3D structure databases

    ProteinModelPortaliA6V648.
    SMRiA6V648. Positions 550-844.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiHVLAAIC.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A6V648-1 [UniParc]FASTAAdd to Basket

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    MPSKPLAEYA RKRDFRQTPE PSGRKRRKDG DGLLRYCIQK HDASRLHYDF    50
    RLELDGTLKS WAVPKGPCLD PAVKRLAVQV EDHPLDYADF EGSIPKGHYG 100
    AGDVIVWDRG AWTPLDDPRE GLEKGHLSFL LDGEKLSGRW HLIRTNLRGK 150
    QPQWFLVKSK DDEARSLDRF DVLKERPDSV LSERTLVPRR GEAATPAARP 200
    ARRGKAGKAG KGGGKTPMPE WIAPELASLV EQPPHGQWAY ELKLDGYRLM 250
    SRIEDGHVRL LTRNGHDWSE RLPHLKKALA GLGLERSWLD GELVVLDEEG 300
    RPDFQALQNA FEEGHGENIL YFLFDLPYHE GEDLRDVALE ERRARLEALL 350
    DGQDEDPLRF SATLAENPRD LLASACRLGL EGVIGKRLGS VYRSRRSNDW 400
    IKLKCQLRQE FVIVGYTEPK GSRRHIGALL LGLYSPDEER RLRYAGKVGT 450
    GFTAASLKKV HERLAPLAIN SSPLAKVPPA RETGVVQWVR PERLCEVSYA 500
    QMTRGGIIRQ AVFHGLREDK PAREVTGERP AGPPPARGAR KAGSASGASR 550
    AATAGVRISH PRRLIDPSIQ ASKLELAEFH ARYADLLLRD LRERPVSLVR 600
    GPDGIGGELF FQKHAARLKI PGIVQLDPAL DPGHPPLLQI RSAEALVGAV 650
    QMGSIEFHTW NASLANLERP DRFVLDLDPD PALPWKRMLE ATQLSLTLLD 700
    ELGLRAFLKT SGGKGMHLLV PLERRHGWDE VKAFAQAISQ HLARLMPERF 750
    SAVSGPRNRV GRIFVDYLRN SRGASTVAAY SVRAREGLPV SVPVFREELD 800
    SLQGANQWNL RSLPQRLDEL AGDDPWADYA GTRQRLSAAM RRQLGRG 847
    Length:847
    Mass (Da):94,686
    Last modified:August 21, 2007 - v1
    Checksum:iB6432AAA4805342D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000744 Genomic DNA. Translation: ABR80822.1.
    RefSeqiYP_001348533.1. NC_009656.1.

    Genome annotation databases

    EnsemblBacteriaiABR80822; ABR80822; PSPA7_3173.
    GeneIDi5355140.
    KEGGipap:PSPA7_3173.
    PATRICi19828004. VBIPseAer80442_3015.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000744 Genomic DNA. Translation: ABR80822.1 .
    RefSeqi YP_001348533.1. NC_009656.1.

    3D structure databases

    ProteinModelPortali A6V648.
    SMRi A6V648. Positions 550-844.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 381754.PSPA7_3173.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABR80822 ; ABR80822 ; PSPA7_3173 .
    GeneIDi 5355140.
    KEGGi pap:PSPA7_3173.
    PATRICi 19828004. VBIPseAer80442_3015.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi HVLAAIC.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci PAER381754:GHMY-3173-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Dodson R.J., Harkins D., Paulsen I.T.
      Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: PA7Imported.

    Entry informationi

    Entry nameiA6V648_PSEA7
    AccessioniPrimary (citable) accession number: A6V648
    Entry historyi
    Integrated into UniProtKB/TrEMBL: August 21, 2007
    Last sequence update: August 21, 2007
    Last modified: October 1, 2014
    This is version 44 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3