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A6V648

- A6V648_PSEA7

UniProt

A6V648 - A6V648_PSEA7

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Protein
Submitted name: DNA ligase D
Gene
ligD, PSPA7_3173
Organism
Pseudomonas aeruginosa (strain PA7)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: RefGenome
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA ligation Source: RefGenome
  2. DNA recombination Source: InterPro
  3. lagging strand elongation Source: RefGenome
  4. nucleotide-excision repair Source: RefGenome
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPAER381754:GHMY-3173-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Name:ligDImported
Ordered Locus Names:PSPA7_3173Imported
OrganismiPseudomonas aeruginosa (strain PA7)Imported
Taxonomic identifieri381754 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000001582: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. chromosome Source: RefGenome
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi381754.PSPA7_3173.

Structurei

3D structure databases

ProteinModelPortaliA6V648.
SMRiA6V648. Positions 550-844.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHVLAAIC.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A6V648-1 [UniParc]FASTAAdd to Basket

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MPSKPLAEYA RKRDFRQTPE PSGRKRRKDG DGLLRYCIQK HDASRLHYDF    50
RLELDGTLKS WAVPKGPCLD PAVKRLAVQV EDHPLDYADF EGSIPKGHYG 100
AGDVIVWDRG AWTPLDDPRE GLEKGHLSFL LDGEKLSGRW HLIRTNLRGK 150
QPQWFLVKSK DDEARSLDRF DVLKERPDSV LSERTLVPRR GEAATPAARP 200
ARRGKAGKAG KGGGKTPMPE WIAPELASLV EQPPHGQWAY ELKLDGYRLM 250
SRIEDGHVRL LTRNGHDWSE RLPHLKKALA GLGLERSWLD GELVVLDEEG 300
RPDFQALQNA FEEGHGENIL YFLFDLPYHE GEDLRDVALE ERRARLEALL 350
DGQDEDPLRF SATLAENPRD LLASACRLGL EGVIGKRLGS VYRSRRSNDW 400
IKLKCQLRQE FVIVGYTEPK GSRRHIGALL LGLYSPDEER RLRYAGKVGT 450
GFTAASLKKV HERLAPLAIN SSPLAKVPPA RETGVVQWVR PERLCEVSYA 500
QMTRGGIIRQ AVFHGLREDK PAREVTGERP AGPPPARGAR KAGSASGASR 550
AATAGVRISH PRRLIDPSIQ ASKLELAEFH ARYADLLLRD LRERPVSLVR 600
GPDGIGGELF FQKHAARLKI PGIVQLDPAL DPGHPPLLQI RSAEALVGAV 650
QMGSIEFHTW NASLANLERP DRFVLDLDPD PALPWKRMLE ATQLSLTLLD 700
ELGLRAFLKT SGGKGMHLLV PLERRHGWDE VKAFAQAISQ HLARLMPERF 750
SAVSGPRNRV GRIFVDYLRN SRGASTVAAY SVRAREGLPV SVPVFREELD 800
SLQGANQWNL RSLPQRLDEL AGDDPWADYA GTRQRLSAAM RRQLGRG 847
Length:847
Mass (Da):94,686
Last modified:August 21, 2007 - v1
Checksum:iB6432AAA4805342D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000744 Genomic DNA. Translation: ABR80822.1.
RefSeqiYP_001348533.1. NC_009656.1.

Genome annotation databases

EnsemblBacteriaiABR80822; ABR80822; PSPA7_3173.
GeneIDi5355140.
KEGGipap:PSPA7_3173.
PATRICi19828004. VBIPseAer80442_3015.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000744 Genomic DNA. Translation: ABR80822.1 .
RefSeqi YP_001348533.1. NC_009656.1.

3D structure databases

ProteinModelPortali A6V648.
SMRi A6V648. Positions 550-844.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 381754.PSPA7_3173.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABR80822 ; ABR80822 ; PSPA7_3173 .
GeneIDi 5355140.
KEGGi pap:PSPA7_3173.
PATRICi 19828004. VBIPseAer80442_3015.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi HVLAAIC.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci PAER381754:GHMY-3173-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Dodson R.J., Harkins D., Paulsen I.T.
    Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PA7Imported.

Entry informationi

Entry nameiA6V648_PSEA7
AccessioniPrimary (citable) accession number: A6V648
Entry historyi
Integrated into UniProtKB/TrEMBL: August 21, 2007
Last sequence update: August 21, 2007
Last modified: May 14, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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