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A6V648

- A6V648_PSEA7

UniProt

A6V648 - A6V648_PSEA7

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Protein
Submitted name:

DNA ligase D

Gene

ligD

Organism
Pseudomonas aeruginosa (strain PA7)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: RefGenome
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA ligation Source: RefGenome
  2. DNA recombination Source: InterPro
  3. lagging strand elongation Source: RefGenome
  4. nucleotide-excision repair Source: RefGenome
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPAER381754:GHMY-3173-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Name:ligDImported
Ordered Locus Names:PSPA7_3173Imported
OrganismiPseudomonas aeruginosa (strain PA7)Imported
Taxonomic identifieri381754 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000001582: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. chromosome Source: RefGenome
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi381754.PSPA7_3173.

Structurei

3D structure databases

ProteinModelPortaliA6V648.
SMRiA6V648. Positions 550-844.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHVLAAIC.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A6V648 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPSKPLAEYA RKRDFRQTPE PSGRKRRKDG DGLLRYCIQK HDASRLHYDF
60 70 80 90 100
RLELDGTLKS WAVPKGPCLD PAVKRLAVQV EDHPLDYADF EGSIPKGHYG
110 120 130 140 150
AGDVIVWDRG AWTPLDDPRE GLEKGHLSFL LDGEKLSGRW HLIRTNLRGK
160 170 180 190 200
QPQWFLVKSK DDEARSLDRF DVLKERPDSV LSERTLVPRR GEAATPAARP
210 220 230 240 250
ARRGKAGKAG KGGGKTPMPE WIAPELASLV EQPPHGQWAY ELKLDGYRLM
260 270 280 290 300
SRIEDGHVRL LTRNGHDWSE RLPHLKKALA GLGLERSWLD GELVVLDEEG
310 320 330 340 350
RPDFQALQNA FEEGHGENIL YFLFDLPYHE GEDLRDVALE ERRARLEALL
360 370 380 390 400
DGQDEDPLRF SATLAENPRD LLASACRLGL EGVIGKRLGS VYRSRRSNDW
410 420 430 440 450
IKLKCQLRQE FVIVGYTEPK GSRRHIGALL LGLYSPDEER RLRYAGKVGT
460 470 480 490 500
GFTAASLKKV HERLAPLAIN SSPLAKVPPA RETGVVQWVR PERLCEVSYA
510 520 530 540 550
QMTRGGIIRQ AVFHGLREDK PAREVTGERP AGPPPARGAR KAGSASGASR
560 570 580 590 600
AATAGVRISH PRRLIDPSIQ ASKLELAEFH ARYADLLLRD LRERPVSLVR
610 620 630 640 650
GPDGIGGELF FQKHAARLKI PGIVQLDPAL DPGHPPLLQI RSAEALVGAV
660 670 680 690 700
QMGSIEFHTW NASLANLERP DRFVLDLDPD PALPWKRMLE ATQLSLTLLD
710 720 730 740 750
ELGLRAFLKT SGGKGMHLLV PLERRHGWDE VKAFAQAISQ HLARLMPERF
760 770 780 790 800
SAVSGPRNRV GRIFVDYLRN SRGASTVAAY SVRAREGLPV SVPVFREELD
810 820 830 840
SLQGANQWNL RSLPQRLDEL AGDDPWADYA GTRQRLSAAM RRQLGRG
Length:847
Mass (Da):94,686
Last modified:August 21, 2007 - v1
Checksum:iB6432AAA4805342D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000744 Genomic DNA. Translation: ABR80822.1.
RefSeqiWP_012075932.1. NC_009656.1.
YP_001348533.1. NC_009656.1.

Genome annotation databases

EnsemblBacteriaiABR80822; ABR80822; PSPA7_3173.
GeneIDi5355140.
KEGGipap:PSPA7_3173.
PATRICi19828004. VBIPseAer80442_3015.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000744 Genomic DNA. Translation: ABR80822.1 .
RefSeqi WP_012075932.1. NC_009656.1.
YP_001348533.1. NC_009656.1.

3D structure databases

ProteinModelPortali A6V648.
SMRi A6V648. Positions 550-844.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 381754.PSPA7_3173.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABR80822 ; ABR80822 ; PSPA7_3173 .
GeneIDi 5355140.
KEGGi pap:PSPA7_3173.
PATRICi 19828004. VBIPseAer80442_3015.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi HVLAAIC.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci PAER381754:GHMY-3173-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Dodson R.J., Harkins D., Paulsen I.T.
    Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PA7Imported.

Entry informationi

Entry nameiA6V648_PSEA7
AccessioniPrimary (citable) accession number: A6V648
Entry historyi
Integrated into UniProtKB/TrEMBL: August 21, 2007
Last sequence update: August 21, 2007
Last modified: October 29, 2014
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3