A6V648 (A6V648_PSEA7) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase D EMBL ABR80822.1

Gene names

Name:	ligD EMBL ABR80822.1
Ordered Locus Names:	PSPA7_3173 EMBL ABR80822.1

Organism

Pseudomonas aeruginosa (strain PA7) [Complete proteome] [HAMAP] EMBL ABR80822.1

Taxonomic identifier

381754 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas aeruginosa group › Pseudomonas aeruginosa

Protein attributes

Sequence length	847 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABR80822.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro lagging strand elongation Inferred from Biological aspect of Ancestor. Source: RefGenome nucleotide-excision repair Inferred from Biological aspect of Ancestor. Source: RefGenome
Cellular_component	chromosome Inferred from Biological aspect of Ancestor. Source: RefGenome
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from Biological aspect of Ancestor. Source: RefGenome DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A6V648 [UniParc]. Last modified August 21, 2007. Version 1. Checksum: B6432AAA4805342D	FASTA	847	94,686
	10 20 30 40 50 60 MPSKPLAEYA RKRDFRQTPE PSGRKRRKDG DGLLRYCIQK HDASRLHYDF RLELDGTLKS 70 80 90 100 110 120 WAVPKGPCLD PAVKRLAVQV EDHPLDYADF EGSIPKGHYG AGDVIVWDRG AWTPLDDPRE 130 140 150 160 170 180 GLEKGHLSFL LDGEKLSGRW HLIRTNLRGK QPQWFLVKSK DDEARSLDRF DVLKERPDSV 190 200 210 220 230 240 LSERTLVPRR GEAATPAARP ARRGKAGKAG KGGGKTPMPE WIAPELASLV EQPPHGQWAY 250 260 270 280 290 300 ELKLDGYRLM SRIEDGHVRL LTRNGHDWSE RLPHLKKALA GLGLERSWLD GELVVLDEEG 310 320 330 340 350 360 RPDFQALQNA FEEGHGENIL YFLFDLPYHE GEDLRDVALE ERRARLEALL DGQDEDPLRF 370 380 390 400 410 420 SATLAENPRD LLASACRLGL EGVIGKRLGS VYRSRRSNDW IKLKCQLRQE FVIVGYTEPK 430 440 450 460 470 480 GSRRHIGALL LGLYSPDEER RLRYAGKVGT GFTAASLKKV HERLAPLAIN SSPLAKVPPA 490 500 510 520 530 540 RETGVVQWVR PERLCEVSYA QMTRGGIIRQ AVFHGLREDK PAREVTGERP AGPPPARGAR 550 560 570 580 590 600 KAGSASGASR AATAGVRISH PRRLIDPSIQ ASKLELAEFH ARYADLLLRD LRERPVSLVR 610 620 630 640 650 660 GPDGIGGELF FQKHAARLKI PGIVQLDPAL DPGHPPLLQI RSAEALVGAV QMGSIEFHTW 670 680 690 700 710 720 NASLANLERP DRFVLDLDPD PALPWKRMLE ATQLSLTLLD ELGLRAFLKT SGGKGMHLLV 730 740 750 760 770 780 PLERRHGWDE VKAFAQAISQ HLARLMPERF SAVSGPRNRV GRIFVDYLRN SRGASTVAAY 790 800 810 820 830 840 SVRAREGLPV SVPVFREELD SLQGANQWNL RSLPQRLDEL AGDDPWADYA GTRQRLSAAM RRQLGRG

References

[1]	Dodson R.J., Harkins D., Paulsen I.T. Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: PA7 EMBL ABR80822.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000744 Genomic DNA. Translation: ABR80822.1.
RefSeq	YP_001348533.1. NC_009656.1.
3D structure databases
ProteinModelPortal	A6V648.
SMR	A6V648. Positions 550-844.
ModBase	Search...
Protein-protein interaction databases
STRING	381754.PSPA7_3173.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABR80822; ABR80822; PSPA7_3173.
GeneID	5355140.
KEGG	pap:PSPA7_3173.
PATRIC	19828004. VBIPseAer80442_3015.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	LVAECEF.
ProtClustDB	PRK05972.
Enzyme and pathway databases
BioCyc	PAER381754:GHMY-3215-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A6V648_PSEA7

Accession

Primary (citable) accession number: A6V648

Entry history

Integrated into UniProtKB/TrEMBL:	August 21, 2007
Last sequence update:	August 21, 2007
Last modified:	May 1, 2013
This is version 38 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)