Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

DNA ligase D

Gene

ligD

Organism
Pseudomonas aeruginosa (strain PA7)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPAER381754:GHMY-3173-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Name:ligDImported
Ordered Locus Names:PSPA7_3173Imported
OrganismiPseudomonas aeruginosa (strain PA7)Imported
Taxonomic identifieri381754 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000001582 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliA6V648.
SMRiA6V648. Positions 550-844.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A6V648-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPSKPLAEYA RKRDFRQTPE PSGRKRRKDG DGLLRYCIQK HDASRLHYDF
60 70 80 90 100
RLELDGTLKS WAVPKGPCLD PAVKRLAVQV EDHPLDYADF EGSIPKGHYG
110 120 130 140 150
AGDVIVWDRG AWTPLDDPRE GLEKGHLSFL LDGEKLSGRW HLIRTNLRGK
160 170 180 190 200
QPQWFLVKSK DDEARSLDRF DVLKERPDSV LSERTLVPRR GEAATPAARP
210 220 230 240 250
ARRGKAGKAG KGGGKTPMPE WIAPELASLV EQPPHGQWAY ELKLDGYRLM
260 270 280 290 300
SRIEDGHVRL LTRNGHDWSE RLPHLKKALA GLGLERSWLD GELVVLDEEG
310 320 330 340 350
RPDFQALQNA FEEGHGENIL YFLFDLPYHE GEDLRDVALE ERRARLEALL
360 370 380 390 400
DGQDEDPLRF SATLAENPRD LLASACRLGL EGVIGKRLGS VYRSRRSNDW
410 420 430 440 450
IKLKCQLRQE FVIVGYTEPK GSRRHIGALL LGLYSPDEER RLRYAGKVGT
460 470 480 490 500
GFTAASLKKV HERLAPLAIN SSPLAKVPPA RETGVVQWVR PERLCEVSYA
510 520 530 540 550
QMTRGGIIRQ AVFHGLREDK PAREVTGERP AGPPPARGAR KAGSASGASR
560 570 580 590 600
AATAGVRISH PRRLIDPSIQ ASKLELAEFH ARYADLLLRD LRERPVSLVR
610 620 630 640 650
GPDGIGGELF FQKHAARLKI PGIVQLDPAL DPGHPPLLQI RSAEALVGAV
660 670 680 690 700
QMGSIEFHTW NASLANLERP DRFVLDLDPD PALPWKRMLE ATQLSLTLLD
710 720 730 740 750
ELGLRAFLKT SGGKGMHLLV PLERRHGWDE VKAFAQAISQ HLARLMPERF
760 770 780 790 800
SAVSGPRNRV GRIFVDYLRN SRGASTVAAY SVRAREGLPV SVPVFREELD
810 820 830 840
SLQGANQWNL RSLPQRLDEL AGDDPWADYA GTRQRLSAAM RRQLGRG
Length:847
Mass (Da):94,686
Last modified:August 21, 2007 - v1
Checksum:iB6432AAA4805342D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000744 Genomic DNA. Translation: ABR80822.1.
RefSeqiWP_012075932.1. NC_009656.1.
YP_001348533.1. NC_009656.1.

Genome annotation databases

EnsemblBacteriaiABR80822; ABR80822; PSPA7_3173.
KEGGipap:PSPA7_3173.
PATRICi19828004. VBIPseAer80442_3015.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000744 Genomic DNA. Translation: ABR80822.1.
RefSeqiWP_012075932.1. NC_009656.1.
YP_001348533.1. NC_009656.1.

3D structure databases

ProteinModelPortaliA6V648.
SMRiA6V648. Positions 550-844.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABR80822; ABR80822; PSPA7_3173.
KEGGipap:PSPA7_3173.
PATRICi19828004. VBIPseAer80442_3015.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHPLDYAD.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciPAER381754:GHMY-3173-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Dodson R.J., Harkins D., Paulsen I.T.
    Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: PA7Imported.

Entry informationi

Entry nameiA6V648_PSEA7
AccessioniPrimary (citable) accession number: A6V648
Entry historyi
Integrated into UniProtKB/TrEMBL: August 21, 2007
Last sequence update: August 21, 2007
Last modified: June 24, 2015
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.