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A6V1P7 (ALGL_PSEA7) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Alginate lyase

EC=4.2.2.3
Alternative name(s):
Poly(beta-D-mannuronate) lyase
Poly(mana) alginate lyase
Gene names
Name:algL
Ordered Locus Names:PSPA7_1598
OrganismPseudomonas aeruginosa (strain PA7) [Complete proteome] [HAMAP]
Taxonomic identifier381754 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length367 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceInferred from homology

General annotation (Comments)

Function

Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond By similarity. HAMAP-Rule MF_00557

Catalytic activity

Eliminative cleavage of polysaccharides containing beta-D-mannuronate residues to give oligosaccharides with 4-deoxy-alpha-L-erythro-hex-4-enopyranuronosyl groups at their non-reducing ends. HAMAP-Rule MF_00557

Subcellular location

Periplasm Potential HAMAP-Rule MF_00557.

Sequence similarities

Belongs to the polysaccharide lyase 5 family.

Ontologies

Keywords
   Cellular componentPeriplasm
   DomainSignal
   Molecular functionLyase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processalginic acid catabolic process

Inferred from electronic annotation. Source: InterPro

   Cellular_componentperiplasmic space

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionpoly(beta-D-mannuronate) lyase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2727 Potential
Chain28 – 367340Alginate lyase HAMAP-Rule MF_00557
PRO_1000061109

Sequences

Sequence LengthMass (Da)Tools
A6V1P7 [UniParc].

Last modified August 21, 2007. Version 1.
Checksum: 35ADE8EA39809C48

FASTA36740,774
        10         20         30         40         50         60 
MKTSHLIRIT LPGALAAALL ASQVSQAADL VPPPGYYAAV GERKGSAGSC PSVPPPYTGS 

        70         80         90        100        110        120 
LVFTSKYEGS DSARATLNAK AEKAFRSQIK DITDMERGAT KLVTQYMRSG RDGDLVCALN 

       130        140        150        160        170        180 
WMSAWARAGA LQSDDFNHTG KSMRKWALGS LSGAYMRLKF SSSRPLSAHA GQSREIEDWF 

       190        200        210        220        230        240 
ARLGTQVVRD WSNLPLKKIN NHSYWAAWSV MSTAVVTNRR DLFDWAVSEF KVAANQVDEQ 

       250        260        270        280        290        300 
GFLPNELKRR QRALAYHNYA LPPLAMIAAF AQVNGVDLRQ ENHGALQRLA ERVMNGVDDE 

       310        320        330        340        350        360 
ETFEEKTGED QDMTDLKVDN KYAWLEPYCA LYRCAPKMLE AKKDREPFNS FRLGGEVTRV 


FSREGGS 

« Hide

References

[1]Dodson R.J., Harkins D., Paulsen I.T.
Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: PA7.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000744 Genomic DNA. Translation: ABR80788.1.
RefSeqYP_001346982.1. NC_009656.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING381754.PSPA7_1598.

Protein family/group databases

CAZyPL5. Polysaccharide Lyase Family 5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABR80788; ABR80788; PSPA7_1598.
GeneID5359375.
KEGGpap:PSPA7_1598.
PATRIC19825005. VBIPseAer80442_1539.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGNOG42597.
HOGENOMHOG000247392.
KOK01729.
OMAAAWSVMA.
OrthoDBEOG6H1PXF.

Enzyme and pathway databases

BioCycPAER381754:GHMY-1598-MONOMER.

Family and domain databases

Gene3D1.50.10.110. 1 hit.
HAMAPMF_00557. Alginate_lyase.
InterProIPR022859. Alginate_lyase.
IPR008397. Alginate_lyase_dom.
IPR008929. Chondroitin_lyas.
[Graphical view]
PfamPF05426. Alginate_lyase. 1 hit.
[Graphical view]
SUPFAMSSF48230. SSF48230. 1 hit.
ProtoNetSearch...

Entry information

Entry nameALGL_PSEA7
AccessionPrimary (citable) accession number: A6V1P7
Entry history
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: August 21, 2007
Last modified: May 14, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families