A6UWV4 (RL6_META3) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
50S ribosomal protein L6P

Gene names

Name:	rpl6p
Ordered Locus Names:	Maeo_1400

Organism

Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) [Complete proteome] [HAMAP]

Taxonomic identifier

419665 [NCBI]

Taxonomic lineage

cellular organisms › Archaea › Euryarchaeota › Methanococci › Methanococcales › Methanococcaceae › Methanococcus › Methanococcus aeolicus

Protein attributes

Sequence length	183 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center By similarity. HAMAP-Rule MF_01365
Subunit structure	Part of the 50S ribosomal subunit By similarity.
Sequence similarities	Belongs to the ribosomal protein L6P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 183	183	50S ribosomal protein L6P HAMAP-Rule MF_01365		PRO_1000055257

Sequences

	Sequence		Length	Mass (Da)
	A6UWV4 [UniParc]. Last modified August 21, 2007. Version 1. Checksum: D30A2DF275218FC9	FASTA	183	20,404
	10 20 30 40 50 60 MPVAAIIREE IEIPESVTIE VINNEEVVVK AGGKELRRIL SYPDVVIKKE DNKVVVESLY 70 80 90 100 110 120 PRKKQAAIIG TFASHIKNII TGVSEGFEYK MKIRYAHFPM KISVKGNEVI IDNFLGEKHP 130 140 150 160 170 180 RKATIMEGVK VKVSGEDVIV TGIDKEKTGQ TAANIEQATR VRGRDTRVFQ DGIYIVEKAG KVL

References

[1]

"Complete sequence of Methanococcus aeolicus Nankai-3." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A. , Sieprawska-Lupa M., Whitman W.B., Richardson P. Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Nankai-3 / ATCC BAA-1280.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000743 Genomic DNA. Translation: ABR56976.1.
RefSeq	YP_001325588.1. NC_009635.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	419665.Maeo_1400.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABR56976; ABR56976; Maeo_1400.
GeneID	5327178.
KEGG	mae:Maeo_1400.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0097.
HOGENOM	HOG000039905.
KO	K02933.
OMA	AVRTVCS.
ProtClustDB	PRK05518.
Enzyme and pathway databases
BioCyc	MAEO419665:GHVZ-1445-MONOMER.
Family and domain databases
Gene3D	3.90.930.12. 2 hits.
HAMAP	MF_01365_A. Ribosomal_L6_A.
InterPro	IPR000702. Ribosomal_L6. IPR020040. Ribosomal_L6_a/b-dom. IPR002359. Ribosomal_L6_CS2. IPR019907. Ribosomal_L6P_arc. [Graphical view]
PANTHER	PTHR11655. PTHR11655. 1 hit. PTHR11655:SF1. PTHR11655:SF1. 1 hit.
Pfam	PF00347. Ribosomal_L6. 2 hits. [Graphical view]
PIRSF	PIRSF002162. Ribosomal_L6. 1 hit.
SUPFAM	SSF56053. Ribosomal_L6. 2 hits.
TIGRFAMs	TIGR03653. arch_L6P. 1 hit.
PROSITE	PS00700. RIBOSOMAL_L6_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RL6_META3

Accession

Primary (citable) accession number: A6UWV4

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 15, 2008
Last sequence update:	August 21, 2007
Last modified:	May 1, 2013
This is version 36 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program