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Protein
Submitted name:

4-aminobutyrate aminotransferase

Gene

Smed_4677

Organism
Sinorhizobium medicae (strain WSM419) (Ensifer medicae)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. 4-aminobutyrate transaminase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. gamma-aminobutyric acid metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

AminotransferaseImported, Transferase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciSMED366394:GJAL-4739-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
4-aminobutyrate aminotransferaseImported
Gene namesi
Ordered Locus Names:Smed_4677Imported
Encoded oniPlasmid pSMED01Imported
OrganismiSinorhizobium medicae (strain WSM419) (Ensifer medicae)Imported
Taxonomic identifieri366394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001108: Plasmid pSMED01

Interactioni

Protein-protein interaction databases

STRINGi366394.Smed_4677.

Structurei

3D structure databases

ProteinModelPortaliA6UIJ4.
SMRiA6UIJ4. Positions 4-421.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0160.
HOGENOMiHOG000020206.
KOiK00823.
OMAiTDWFLFC.
OrthoDBiEOG6QVRHN.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 2 hits.
InterProiIPR004632. 4NH2But_aminotransferase_bac.
IPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11986. PTHR11986. 1 hit.
PfamiPF00202. Aminotran_3. 1 hit.
[Graphical view]
PIRSFiPIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR00700. GABAtrnsam. 1 hit.
PROSITEiPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A6UIJ4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTSLTDRKNA AISRGVGMTT QIYAERAENA EIWDKEGNRY IDFASGIAVV
60 70 80 90 100
NTGHRHPKVI AAVKAQLDRF THTCHQVVPY ENYVHLAERL NAIVPGDFAK
110 120 130 140 150
KTIFVTTGAE AVENAVKIAR AATGRQAIVA FGGGFHGRTF MGMALTGKVV
160 170 180 190 200
PYKVGFGAMP ADVFHAPFPV ELHGVSVEQS LAALKKLFAA DVDPNRVAAI
210 220 230 240 250
IIEPVQGEGG FYPVPTAFMK ALREICDQNG ILLIADEVQT GFARTGKLLA
260 270 280 290 300
MEHHGVAPDL TTMAKSLAGG FPLAAVTGRA EIMDAPGPGG LGGTYGGNPL
310 320 330 340 350
GIAAAHAVLD VIAEENLCER ANQLGNRLKQ RLAAIREKAP EIVDIRGPGF
360 370 380 390 400
MNAVEFNDVK TNVPSAEFAN KVRLLALEKG LILLTCGVHG NVIRFLAPIT
410 420
IQDDVFAEAL DILESSILEA RG
Length:422
Mass (Da):44,949
Last modified:August 21, 2007 - v1
Checksum:iD4799CA6A777B87D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000739 Genomic DNA. Translation: ABR63474.1.
RefSeqiYP_001313407.1. NC_009620.1.

Genome annotation databases

EnsemblBacteriaiABR63474; ABR63474; Smed_4677.
GeneIDi5318134.
KEGGismd:Smed_4677.
PATRICi23614979. VBISinMed134228_1161.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000739 Genomic DNA. Translation: ABR63474.1.
RefSeqiYP_001313407.1. NC_009620.1.

3D structure databases

ProteinModelPortaliA6UIJ4.
SMRiA6UIJ4. Positions 4-421.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi366394.Smed_4677.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABR63474; ABR63474; Smed_4677.
GeneIDi5318134.
KEGGismd:Smed_4677.
PATRICi23614979. VBISinMed134228_1161.

Phylogenomic databases

eggNOGiCOG0160.
HOGENOMiHOG000020206.
KOiK00823.
OMAiTDWFLFC.
OrthoDBiEOG6QVRHN.

Enzyme and pathway databases

BioCyciSMED366394:GJAL-4739-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 2 hits.
InterProiIPR004632. 4NH2But_aminotransferase_bac.
IPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11986. PTHR11986. 1 hit.
PfamiPF00202. Aminotran_3. 1 hit.
[Graphical view]
PIRSFiPIRSF000521. Transaminase_4ab_Lys_Orn. 1 hit.
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR00700. GABAtrnsam. 1 hit.
PROSITEiPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Sinorhizobium medicae WSM419 plasmid pSMED01."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Reeve W.G., Richardson P.
    Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WSM419Imported.

Entry informationi

Entry nameiA6UIJ4_SINMW
AccessioniPrimary (citable) accession number: A6UIJ4
Entry historyi
Integrated into UniProtKB/TrEMBL: August 21, 2007
Last sequence update: August 21, 2007
Last modified: January 7, 2015
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.