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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Smed_4122

Organism
Sinorhizobium medicae (strain WSM419) (Ensifer medicae)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSMED366394:GJAL-4183-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Smed_4122Imported
Encoded oniPlasmid pSMED01Imported
OrganismiSinorhizobium medicae (strain WSM419) (Ensifer medicae)Imported
Taxonomic identifieri366394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001108 Componenti: Plasmid pSMED01

Structurei

3D structure databases

ProteinModelPortaliA6UGZ8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222508.
OMAiHERTADC.
OrthoDBiEOG63NMFT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A6UGZ8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASPADGKPT KKAALSKAAE KTGGFPLPVG TAPMEARSAA ELPGGGPWQY
60 70 80 90 100
EPKWDGFRCL AFKSGSDVDI RAKSGKPLGR FFPEILDLLH RLGPKTFVLD
110 120 130 140 150
GELVIAIEGR LSFDALQMRL HPAASRVEKL SLETPAKLIL FDMLADTDGA
160 170 180 190 200
VLTGKPLRER RARLEAFVKE NAVAKMVELS PSTLDRREAG RWLTSWEAGA
210 220 230 240 250
TDGVVAKRLD GAYECGERTM VKVKRLRTAD CVVGGYRYES NGPLVGSLLL
260 270 280 290 300
GLYDAEGLLN HVGFTATIAD KERAALTRQL EALREPPGFT GKAPGGPSRW
310 320 330 340 350
SSERSGEWEP VRPELVVEVR FDHVGNRRFR HGTKLMRWRS DKDPRQCTFE

QIAPP
Length:355
Mass (Da):39,003
Last modified:August 21, 2007 - v1
Checksum:i4EBB48120BAC681C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000739 Genomic DNA. Translation: ABR62928.1.
RefSeqiWP_011969750.1. NC_009620.1.
YP_001312861.1. NC_009620.1.

Genome annotation databases

EnsemblBacteriaiABR62928; ABR62928; Smed_4122.
GeneIDi5319315.
KEGGismd:Smed_4122.
PATRICi23613805. VBISinMed134228_0575.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000739 Genomic DNA. Translation: ABR62928.1.
RefSeqiWP_011969750.1. NC_009620.1.
YP_001312861.1. NC_009620.1.

3D structure databases

ProteinModelPortaliA6UGZ8.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABR62928; ABR62928; Smed_4122.
GeneIDi5319315.
KEGGismd:Smed_4122.
PATRICi23613805. VBISinMed134228_0575.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222508.
OMAiHERTADC.
OrthoDBiEOG63NMFT.

Enzyme and pathway databases

BioCyciSMED366394:GJAL-4183-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Sinorhizobium medicae WSM419 plasmid pSMED01."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Reeve W.G., Richardson P.
    Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WSM419Imported.

Entry informationi

Entry nameiA6UGZ8_SINMW
AccessioniPrimary (citable) accession number: A6UGZ8
Entry historyi
Integrated into UniProtKB/TrEMBL: August 21, 2007
Last sequence update: August 21, 2007
Last modified: June 24, 2015
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.