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A6UGZ8

- A6UGZ8_SINMW

UniProt

A6UGZ8 - A6UGZ8_SINMW

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Protein
Submitted name: ATP dependent DNA ligase
Gene
Smed_4122
Organism
Sinorhizobium medicae (strain WSM419) (Ensifer medicae)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSMED366394:GJAL-4183-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Smed_4122Imported
Encoded oniPlasmid pSMED01Imported
OrganismiSinorhizobium medicae (strain WSM419) (Ensifer medicae)Imported
Taxonomic identifieri366394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001108: Plasmid pSMED01

Interactioni

Protein-protein interaction databases

STRINGi366394.Smed_4122.

Structurei

3D structure databases

ProteinModelPortaliA6UGZ8.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000222508.
KOiK01971.
OMAiPFPPMEA.
OrthoDBiEOG63NMFT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A6UGZ8-1 [UniParc]FASTAAdd to Basket

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MASPADGKPT KKAALSKAAE KTGGFPLPVG TAPMEARSAA ELPGGGPWQY    50
EPKWDGFRCL AFKSGSDVDI RAKSGKPLGR FFPEILDLLH RLGPKTFVLD 100
GELVIAIEGR LSFDALQMRL HPAASRVEKL SLETPAKLIL FDMLADTDGA 150
VLTGKPLRER RARLEAFVKE NAVAKMVELS PSTLDRREAG RWLTSWEAGA 200
TDGVVAKRLD GAYECGERTM VKVKRLRTAD CVVGGYRYES NGPLVGSLLL 250
GLYDAEGLLN HVGFTATIAD KERAALTRQL EALREPPGFT GKAPGGPSRW 300
SSERSGEWEP VRPELVVEVR FDHVGNRRFR HGTKLMRWRS DKDPRQCTFE 350
QIAPP 355
Length:355
Mass (Da):39,003
Last modified:August 21, 2007 - v1
Checksum:i4EBB48120BAC681C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000739 Genomic DNA. Translation: ABR62928.1.
RefSeqiYP_001312861.1. NC_009620.1.

Genome annotation databases

EnsemblBacteriaiABR62928; ABR62928; Smed_4122.
GeneIDi5319315.
KEGGismd:Smed_4122.
PATRICi23613805. VBISinMed134228_0575.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000739 Genomic DNA. Translation: ABR62928.1 .
RefSeqi YP_001312861.1. NC_009620.1.

3D structure databases

ProteinModelPortali A6UGZ8.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 366394.Smed_4122.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABR62928 ; ABR62928 ; Smed_4122 .
GeneIDi 5319315.
KEGGi smd:Smed_4122.
PATRICi 23613805. VBISinMed134228_0575.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000222508.
KOi K01971.
OMAi PFPPMEA.
OrthoDBi EOG63NMFT.

Enzyme and pathway databases

BioCyci SMED366394:GJAL-4183-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Sinorhizobium medicae WSM419 plasmid pSMED01."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Reeve W.G., Richardson P.
    Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WSM419.

Entry informationi

Entry nameiA6UGZ8_SINMW
AccessioniPrimary (citable) accession number: A6UGZ8
Entry historyi
Integrated into UniProtKB/TrEMBL: August 21, 2007
Last sequence update: August 21, 2007
Last modified: May 14, 2014
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported

External Data

Dasty 3

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