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A6UGZ8 (A6UGZ8_SINMW) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 40. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Smed_4122 EMBL ABR62928.1
Encoded onPlasmid pSMED01 EMBL ABR62928.1
OrganismSinorhizobium medicae (strain WSM419) (Ensifer medicae) [Complete proteome] [HAMAP] EMBL ABR62928.1
Taxonomic identifier366394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length355 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ABR62928.1
   Technical termComplete proteome
Plasmid EMBL ABR62928.1
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A6UGZ8 [UniParc].

Last modified August 21, 2007. Version 1.
Checksum: 4EBB48120BAC681C

FASTA35539,003
        10         20         30         40         50         60 
MASPADGKPT KKAALSKAAE KTGGFPLPVG TAPMEARSAA ELPGGGPWQY EPKWDGFRCL 

        70         80         90        100        110        120 
AFKSGSDVDI RAKSGKPLGR FFPEILDLLH RLGPKTFVLD GELVIAIEGR LSFDALQMRL 

       130        140        150        160        170        180 
HPAASRVEKL SLETPAKLIL FDMLADTDGA VLTGKPLRER RARLEAFVKE NAVAKMVELS 

       190        200        210        220        230        240 
PSTLDRREAG RWLTSWEAGA TDGVVAKRLD GAYECGERTM VKVKRLRTAD CVVGGYRYES 

       250        260        270        280        290        300 
NGPLVGSLLL GLYDAEGLLN HVGFTATIAD KERAALTRQL EALREPPGFT GKAPGGPSRW 

       310        320        330        340        350 
SSERSGEWEP VRPELVVEVR FDHVGNRRFR HGTKLMRWRS DKDPRQCTFE QIAPP 

« Hide

References

[1]"Complete sequence of Sinorhizobium medicae WSM419 plasmid pSMED01."
US DOE Joint Genome Institute
Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Reeve W.G., Richardson P.
Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: WSM419.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000739 Genomic DNA. Translation: ABR62928.1.
RefSeqYP_001312861.1. NC_009620.1.

3D structure databases

ProteinModelPortalA6UGZ8.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING366394.Smed_4122.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaABR62928; ABR62928; Smed_4122.
GeneID5319315.
KEGGsmd:Smed_4122.
PATRIC23613805. VBISinMed134228_0575.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000222508.
KOK01971.
OMAERTADCV.
OrthoDBEOG63NMFT.
ProtClustDBPRK08224.

Enzyme and pathway databases

BioCycSMED366394:GJAL-4183-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA6UGZ8_SINMW
AccessionPrimary (citable) accession number: A6UGZ8
Entry history
Integrated into UniProtKB/TrEMBL: August 21, 2007
Last sequence update: August 21, 2007
Last modified: April 16, 2014
This is version 40 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)