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A6UGR6

- A6UGR6_SINMW

UniProt

A6UGR6 - A6UGR6_SINMW

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Protein
Submitted name:

Alpha amylase catalytic region

Gene

Smed_4038

Organism
Sinorhizobium medicae (strain WSM419) (Ensifer medicae)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. catalytic activity Source: InterPro
  2. cation binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciSMED366394:GJAL-4099-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha amylase catalytic regionImported
Gene namesi
Ordered Locus Names:Smed_4038Imported
Encoded oniPlasmid pSMED01Imported
OrganismiSinorhizobium medicae (strain WSM419) (Ensifer medicae)Imported
Taxonomic identifieri366394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001108: Plasmid pSMED01

Interactioni

Protein-protein interaction databases

STRINGi366394.Smed_4038.

Structurei

3D structure databases

ProteinModelPortaliA6UGR6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000220639.
KOiK05343.
OMAiYESESLE.
OrthoDBiEOG6RVFV2.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 3 hits.
InterProiIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 2 hits.

Sequencei

Sequence statusi: Complete.

A6UGR6-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MNEAPWFTSS VIYGIDVRRF ADGNGDGIGD FIGLRERVVY LSHLGIDCVW
60 70 80 90 100
LSPFFRSPFA DNGYDVSDYY SVDPALGTLD DFLNFLHAAG EHGIRVIIDL
110 120 130 140 150
VANHTSSEHP WFQAARRDAR CRFRDYYVWS ASPPPVAPDN KTAFPGEESS
160 170 180 190 200
VWTYDELAQA YYFHKFRHFQ PDLNIANPAV RDELLRVVDY WLTLGVDGFR
210 220 230 240 250
VDAAPFVIGE TGIEHADPRD PHGFLREMRE LVEGRRRDGL LLGEADLSPE
260 270 280 290 300
KLRPYFGEGK LDLLFNFVLS ASFAASLARQ KADLIGQALS IMPEPPPHRG
310 320 330 340 350
WVNFLRNLDE LNLDRLPEDI QQETFAAFAP DEEMRIYGRG IRRRLAPMLE
360 370 380 390 400
GNQTRLELAF SLLLSSPGVP LVLYGDEIGM GEDPSRPGRE PVRVPMQWNA
410 420 430 440 450
GANAGFSTAQ RARLIQPIVT DGPFAFKRIN VEAQREDPRS LLNRVRAMIL
460 470 480 490 500
MRRSHKLFQR GRPIVLHTRD PALFALAYSD GTELFVVLHN LTEAKRRAEV
510 520 530 540
ELPGAIDARL KDVFGEGEVE LSGQHLTMGL GPFGYAWLHS GRKD
Length:544
Mass (Da):61,374
Last modified:August 21, 2007 - v1
Checksum:i9D5A6913E7CE8518
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000739 Genomic DNA. Translation: ABR62846.1.
RefSeqiYP_001312779.1. NC_009620.1.

Genome annotation databases

EnsemblBacteriaiABR62846; ABR62846; Smed_4038.
GeneIDi5318338.
KEGGismd:Smed_4038.
PATRICi23613626. VBISinMed134228_0486.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000739 Genomic DNA. Translation: ABR62846.1 .
RefSeqi YP_001312779.1. NC_009620.1.

3D structure databases

ProteinModelPortali A6UGR6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 366394.Smed_4038.

Protein family/group databases

CAZyi GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABR62846 ; ABR62846 ; Smed_4038 .
GeneIDi 5318338.
KEGGi smd:Smed_4038.
PATRICi 23613626. VBISinMed134228_0486.

Phylogenomic databases

eggNOGi COG0366.
HOGENOMi HOG000220639.
KOi K05343.
OMAi YESESLE.
OrthoDBi EOG6RVFV2.

Enzyme and pathway databases

BioCyci SMED366394:GJAL-4099-MONOMER.

Family and domain databases

Gene3Di 2.60.40.1180. 1 hit.
3.20.20.80. 3 hits.
InterProi IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
[Graphical view ]
SMARTi SM00642. Aamy. 1 hit.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 2 hits.
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Sinorhizobium medicae WSM419 plasmid pSMED01."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Reeve W.G., Richardson P.
    Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WSM419Imported.

Entry informationi

Entry nameiA6UGR6_SINMW
AccessioniPrimary (citable) accession number: A6UGR6
Entry historyi
Integrated into UniProtKB/TrEMBL: August 21, 2007
Last sequence update: August 21, 2007
Last modified: October 29, 2014
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported, PlasmidImported

External Data

Dasty 3