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A6UGR6

- A6UGR6_SINMW

UniProt

A6UGR6 - A6UGR6_SINMW

Protein
Submitted name:

Alpha amylase catalytic region

Gene

Smed_4038

Organism
Sinorhizobium medicae (strain WSM419) (Ensifer medicae)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 42 (01 Oct 2014)
      Sequence version 1 (21 Aug 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. catalytic activity Source: InterPro
    2. cation binding Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: InterPro

    Enzyme and pathway databases

    BioCyciSMED366394:GJAL-4099-MONOMER.

    Protein family/group databases

    CAZyiGH13. Glycoside Hydrolase Family 13.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Alpha amylase catalytic regionImported
    Gene namesi
    Ordered Locus Names:Smed_4038Imported
    Encoded oniPlasmid pSMED01Imported
    OrganismiSinorhizobium medicae (strain WSM419) (Ensifer medicae)Imported
    Taxonomic identifieri366394 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001108: Plasmid pSMED01

    Interactioni

    Protein-protein interaction databases

    STRINGi366394.Smed_4038.

    Structurei

    3D structure databases

    ProteinModelPortaliA6UGR6.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG0366.
    HOGENOMiHOG000220639.
    KOiK05343.
    OMAiYESESLE.
    OrthoDBiEOG6RVFV2.

    Family and domain databases

    Gene3Di2.60.40.1180. 1 hit.
    3.20.20.80. 3 hits.
    InterProiIPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    SMARTiSM00642. Aamy. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 2 hits.

    Sequencei

    Sequence statusi: Complete.

    A6UGR6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNEAPWFTSS VIYGIDVRRF ADGNGDGIGD FIGLRERVVY LSHLGIDCVW    50
    LSPFFRSPFA DNGYDVSDYY SVDPALGTLD DFLNFLHAAG EHGIRVIIDL 100
    VANHTSSEHP WFQAARRDAR CRFRDYYVWS ASPPPVAPDN KTAFPGEESS 150
    VWTYDELAQA YYFHKFRHFQ PDLNIANPAV RDELLRVVDY WLTLGVDGFR 200
    VDAAPFVIGE TGIEHADPRD PHGFLREMRE LVEGRRRDGL LLGEADLSPE 250
    KLRPYFGEGK LDLLFNFVLS ASFAASLARQ KADLIGQALS IMPEPPPHRG 300
    WVNFLRNLDE LNLDRLPEDI QQETFAAFAP DEEMRIYGRG IRRRLAPMLE 350
    GNQTRLELAF SLLLSSPGVP LVLYGDEIGM GEDPSRPGRE PVRVPMQWNA 400
    GANAGFSTAQ RARLIQPIVT DGPFAFKRIN VEAQREDPRS LLNRVRAMIL 450
    MRRSHKLFQR GRPIVLHTRD PALFALAYSD GTELFVVLHN LTEAKRRAEV 500
    ELPGAIDARL KDVFGEGEVE LSGQHLTMGL GPFGYAWLHS GRKD 544
    Length:544
    Mass (Da):61,374
    Last modified:August 21, 2007 - v1
    Checksum:i9D5A6913E7CE8518
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000739 Genomic DNA. Translation: ABR62846.1.
    RefSeqiWP_011969668.1. NC_009620.1.
    YP_001312779.1. NC_009620.1.

    Genome annotation databases

    EnsemblBacteriaiABR62846; ABR62846; Smed_4038.
    GeneIDi5318338.
    KEGGismd:Smed_4038.
    PATRICi23613626. VBISinMed134228_0486.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000739 Genomic DNA. Translation: ABR62846.1 .
    RefSeqi WP_011969668.1. NC_009620.1.
    YP_001312779.1. NC_009620.1.

    3D structure databases

    ProteinModelPortali A6UGR6.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 366394.Smed_4038.

    Protein family/group databases

    CAZyi GH13. Glycoside Hydrolase Family 13.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABR62846 ; ABR62846 ; Smed_4038 .
    GeneIDi 5318338.
    KEGGi smd:Smed_4038.
    PATRICi 23613626. VBISinMed134228_0486.

    Phylogenomic databases

    eggNOGi COG0366.
    HOGENOMi HOG000220639.
    KOi K05343.
    OMAi YESESLE.
    OrthoDBi EOG6RVFV2.

    Enzyme and pathway databases

    BioCyci SMED366394:GJAL-4099-MONOMER.

    Family and domain databases

    Gene3Di 2.60.40.1180. 1 hit.
    3.20.20.80. 3 hits.
    InterProi IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    SMARTi SM00642. Aamy. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 2 hits.
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Sinorhizobium medicae WSM419 plasmid pSMED01."
      US DOE Joint Genome Institute
      Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Reeve W.G., Richardson P.
      Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: WSM419Imported.

    Entry informationi

    Entry nameiA6UGR6_SINMW
    AccessioniPrimary (citable) accession number: A6UGR6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: August 21, 2007
    Last sequence update: August 21, 2007
    Last modified: October 1, 2014
    This is version 42 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported, PlasmidImported

    External Data

    Dasty 3