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Protein
Submitted name:

DNA ligase D

Gene

Smed_2631

Organism
Sinorhizobium medicae (strain WSM419) (Ensifer medicae)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSMED366394:GJAL-2673-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Smed_2631Imported
OrganismiSinorhizobium medicae (strain WSM419) (Ensifer medicae)Imported
Taxonomic identifieri366394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001108 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi366394.Smed_2631.

Structurei

3D structure databases

ProteinModelPortaliA6UCT1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A6UCT1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAARNETLTE YNRRRDFTRT KEPKGTVARR SGNRMRFLVQ KHAATRLHYD
60 70 80 90 100
FRLEWEGVLK SWAVTRGPSL NPEDKRLAVR TEDHPLAYGD FEGTIPKGEY
110 120 130 140 150
GGGTVMLWDT GWWEPEDDPS KALRKGKLSF KLHGSRMKGG WALVRMRPRE
160 170 180 190 200
GEKRENWLLV KETDEIASKD GESLINENIT SVVTGRTMEE IAEGRGEKRS
210 220 230 240 250
RVWHSNKSTA ANLRAGAVAE DGNARKRPTR KPSGKLPTFR APQLATLVTQ
260 270 280 290 300
VPVGDAWLNE AKFDGYRLVC ALGGGTARCY TRNGLDWTEK FPVIAAALAE
310 320 330 340 350
LDCRSALIDG EVVALSEGGS TFSALQKALA TGASTRLYAF DLIELDGKDL
360 370 380 390 400
SRKPLVERKE KLEALLQTLG TTSTIQFSEH VRGNGEHVLA AICKAGQEGI
410 420 430 440 450
IAKEANAPYR SGRTRSWLKV KCTKRQEFVI GGYSLSDKKG RAFASLIVGT
460 470 480 490 500
FEGGKLIYRG GVGTGFSKKT MEDLAAAFAS RKRETSPFDS IPRERMRHSV
510 520 530 540 550
WLKPDLVAEV DFAEFTAEGH IRHGSFEGLR EDKEAKAVKL ETSKPAEVES
560 570 580 590 600
GTTTKGKSTT KARRTSAAQG DADVLGIRIS HPDRVLFKGQ GITKIDLARY
610 620 630 640 650
YAIVADRMLP FAADHPVSLV RCPQGGERQC FFQKHASDGF PDAIREVPIT
660 670 680 690 700
ESSGDTEDYM YIHDAKGLVA AVQMGTLEFH IWGARTDRLE KPDRLVFDLD
710 720 730 740 750
PDPSVDFATV KAAAVELRDE LAGIGLKTVP MVTGGKGVHV IVPLRPHAEW
760 770 780 790 800
DEVKGFAKAL AQSFAERDPD HFVATMSKAK RKGRIFIDWL RNDRGATAIA
810 820 830 840 850
PYSTRARAGG PVATPVGWEE LESLDAANGF HIPEILARIE AGTDPWRDIG
860
KISQSLTKKI LNSVA
Length:865
Mass (Da):95,409
Last modified:August 21, 2007 - v1
Checksum:i23C03684C3E2D7E1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000738 Genomic DNA. Translation: ABR61461.1.
RefSeqiWP_012066850.1. NC_009636.1.
YP_001328296.1. NC_009636.1.

Genome annotation databases

EnsemblBacteriaiABR61461; ABR61461; Smed_2631.
GeneIDi5323500.
KEGGismd:Smed_2631.
PATRICi23624399. VBISinMed134228_5828.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000738 Genomic DNA. Translation: ABR61461.1.
RefSeqiWP_012066850.1. NC_009636.1.
YP_001328296.1. NC_009636.1.

3D structure databases

ProteinModelPortaliA6UCT1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi366394.Smed_2631.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABR61461; ABR61461; Smed_2631.
GeneIDi5323500.
KEGGismd:Smed_2631.
PATRICi23624399. VBISinMed134228_5828.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiDWTIRSI.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciSMED366394:GJAL-2673-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of Sinorhizobium medicae WSM419 chromosome."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Reeve W.G., Richardson P.
    Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WSM419Imported.

Entry informationi

Entry nameiA6UCT1_SINMW
AccessioniPrimary (citable) accession number: A6UCT1
Entry historyi
Integrated into UniProtKB/TrEMBL: August 21, 2007
Last sequence update: August 21, 2007
Last modified: May 27, 2015
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.