A6UCT1 (A6UCT1_SINMW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase D EMBL ABR61461.1

Gene names

Ordered Locus Names:

Smed_2631 EMBL ABR61461.1

Organism

Sinorhizobium medicae (strain WSM419) (Ensifer medicae) [Complete proteome] [HAMAP] EMBL ABR61461.1

Taxonomic identifier

366394 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium › Sinorhizobium medicae

Protein attributes

Sequence length	865 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ABR61461.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	A6UCT1 [UniParc]. Last modified August 21, 2007. Version 1. Checksum: 23C03684C3E2D7E1	FASTA	865	95,409
	10 20 30 40 50 60 MAARNETLTE YNRRRDFTRT KEPKGTVARR SGNRMRFLVQ KHAATRLHYD FRLEWEGVLK 70 80 90 100 110 120 SWAVTRGPSL NPEDKRLAVR TEDHPLAYGD FEGTIPKGEY GGGTVMLWDT GWWEPEDDPS 130 140 150 160 170 180 KALRKGKLSF KLHGSRMKGG WALVRMRPRE GEKRENWLLV KETDEIASKD GESLINENIT 190 200 210 220 230 240 SVVTGRTMEE IAEGRGEKRS RVWHSNKSTA ANLRAGAVAE DGNARKRPTR KPSGKLPTFR 250 260 270 280 290 300 APQLATLVTQ VPVGDAWLNE AKFDGYRLVC ALGGGTARCY TRNGLDWTEK FPVIAAALAE 310 320 330 340 350 360 LDCRSALIDG EVVALSEGGS TFSALQKALA TGASTRLYAF DLIELDGKDL SRKPLVERKE 370 380 390 400 410 420 KLEALLQTLG TTSTIQFSEH VRGNGEHVLA AICKAGQEGI IAKEANAPYR SGRTRSWLKV 430 440 450 460 470 480 KCTKRQEFVI GGYSLSDKKG RAFASLIVGT FEGGKLIYRG GVGTGFSKKT MEDLAAAFAS 490 500 510 520 530 540 RKRETSPFDS IPRERMRHSV WLKPDLVAEV DFAEFTAEGH IRHGSFEGLR EDKEAKAVKL 550 560 570 580 590 600 ETSKPAEVES GTTTKGKSTT KARRTSAAQG DADVLGIRIS HPDRVLFKGQ GITKIDLARY 610 620 630 640 650 660 YAIVADRMLP FAADHPVSLV RCPQGGERQC FFQKHASDGF PDAIREVPIT ESSGDTEDYM 670 680 690 700 710 720 YIHDAKGLVA AVQMGTLEFH IWGARTDRLE KPDRLVFDLD PDPSVDFATV KAAAVELRDE 730 740 750 760 770 780 LAGIGLKTVP MVTGGKGVHV IVPLRPHAEW DEVKGFAKAL AQSFAERDPD HFVATMSKAK 790 800 810 820 830 840 RKGRIFIDWL RNDRGATAIA PYSTRARAGG PVATPVGWEE LESLDAANGF HIPEILARIE 850 860 AGTDPWRDIG KISQSLTKKI LNSVA

References

[1]

"Complete sequence of Sinorhizobium medicae WSM419 chromosome." US DOE Joint Genome Institute Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Reeve W.G., Richardson P. Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: WSM419.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000738 Genomic DNA. Translation: ABR61461.1.
RefSeq	YP_001328296.1. NC_009636.1.
3D structure databases
ProteinModelPortal	A6UCT1.
ModBase	Search...
Protein-protein interaction databases
STRING	366394.Smed_2631.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ABR61461; ABR61461; Smed_2631.
GeneID	5323500.
KEGG	smd:Smed_2631.
PATRIC	23624399. VBISinMed134228_5828.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	DWTIRSI.
ProtClustDB	CLSK2484757.
Enzyme and pathway databases
BioCyc	SMED366394:GJAL-2673-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

A6UCT1_SINMW

Accession

Primary (citable) accession number: A6UCT1

Entry history

Integrated into UniProtKB/TrEMBL:	August 21, 2007
Last sequence update:	August 21, 2007
Last modified:	May 1, 2013
This is version 36 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)