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A6UCT1

- A6UCT1_SINMW

UniProt

A6UCT1 - A6UCT1_SINMW

Protein
Submitted name:

DNA ligase D

Gene

Smed_2631

Organism
Sinorhizobium medicae (strain WSM419) (Ensifer medicae)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 42 (01 Oct 2014)
      Sequence version 1 (21 Aug 2007)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSMED366394:GJAL-2673-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase DImported
    Gene namesi
    Ordered Locus Names:Smed_2631Imported
    OrganismiSinorhizobium medicae (strain WSM419) (Ensifer medicae)Imported
    Taxonomic identifieri366394 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001108: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi366394.Smed_2631.

    Structurei

    3D structure databases

    ProteinModelPortaliA6UCT1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG3285.
    HOGENOMiHOG000222509.
    KOiK01971.
    OMAiHVLAAIC.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    A6UCT1-1 [UniParc]FASTAAdd to Basket

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    MAARNETLTE YNRRRDFTRT KEPKGTVARR SGNRMRFLVQ KHAATRLHYD    50
    FRLEWEGVLK SWAVTRGPSL NPEDKRLAVR TEDHPLAYGD FEGTIPKGEY 100
    GGGTVMLWDT GWWEPEDDPS KALRKGKLSF KLHGSRMKGG WALVRMRPRE 150
    GEKRENWLLV KETDEIASKD GESLINENIT SVVTGRTMEE IAEGRGEKRS 200
    RVWHSNKSTA ANLRAGAVAE DGNARKRPTR KPSGKLPTFR APQLATLVTQ 250
    VPVGDAWLNE AKFDGYRLVC ALGGGTARCY TRNGLDWTEK FPVIAAALAE 300
    LDCRSALIDG EVVALSEGGS TFSALQKALA TGASTRLYAF DLIELDGKDL 350
    SRKPLVERKE KLEALLQTLG TTSTIQFSEH VRGNGEHVLA AICKAGQEGI 400
    IAKEANAPYR SGRTRSWLKV KCTKRQEFVI GGYSLSDKKG RAFASLIVGT 450
    FEGGKLIYRG GVGTGFSKKT MEDLAAAFAS RKRETSPFDS IPRERMRHSV 500
    WLKPDLVAEV DFAEFTAEGH IRHGSFEGLR EDKEAKAVKL ETSKPAEVES 550
    GTTTKGKSTT KARRTSAAQG DADVLGIRIS HPDRVLFKGQ GITKIDLARY 600
    YAIVADRMLP FAADHPVSLV RCPQGGERQC FFQKHASDGF PDAIREVPIT 650
    ESSGDTEDYM YIHDAKGLVA AVQMGTLEFH IWGARTDRLE KPDRLVFDLD 700
    PDPSVDFATV KAAAVELRDE LAGIGLKTVP MVTGGKGVHV IVPLRPHAEW 750
    DEVKGFAKAL AQSFAERDPD HFVATMSKAK RKGRIFIDWL RNDRGATAIA 800
    PYSTRARAGG PVATPVGWEE LESLDAANGF HIPEILARIE AGTDPWRDIG 850
    KISQSLTKKI LNSVA 865
    Length:865
    Mass (Da):95,409
    Last modified:August 21, 2007 - v1
    Checksum:i23C03684C3E2D7E1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000738 Genomic DNA. Translation: ABR61461.1.
    RefSeqiYP_001328296.1. NC_009636.1.

    Genome annotation databases

    EnsemblBacteriaiABR61461; ABR61461; Smed_2631.
    GeneIDi5323500.
    KEGGismd:Smed_2631.
    PATRICi23624399. VBISinMed134228_5828.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000738 Genomic DNA. Translation: ABR61461.1 .
    RefSeqi YP_001328296.1. NC_009636.1.

    3D structure databases

    ProteinModelPortali A6UCT1.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 366394.Smed_2631.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABR61461 ; ABR61461 ; Smed_2631 .
    GeneIDi 5323500.
    KEGGi smd:Smed_2631.
    PATRICi 23624399. VBISinMed134228_5828.

    Phylogenomic databases

    eggNOGi COG3285.
    HOGENOMi HOG000222509.
    KOi K01971.
    OMAi HVLAAIC.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci SMED366394:GJAL-2673-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete sequence of Sinorhizobium medicae WSM419 chromosome."
      US DOE Joint Genome Institute
      Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Reeve W.G., Richardson P.
      Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: WSM419Imported.

    Entry informationi

    Entry nameiA6UCT1_SINMW
    AccessioniPrimary (citable) accession number: A6UCT1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: August 21, 2007
    Last sequence update: August 21, 2007
    Last modified: October 1, 2014
    This is version 42 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3