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A6UCT1

- A6UCT1_SINMW

UniProt

A6UCT1 - A6UCT1_SINMW

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Protein
Submitted name: DNA ligase D
Gene
Smed_2631
Organism
Sinorhizobium medicae (strain WSM419) (Ensifer medicae)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSMED366394:GJAL-2673-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase DImported
Gene namesi
Ordered Locus Names:Smed_2631Imported
OrganismiSinorhizobium medicae (strain WSM419) (Ensifer medicae)Imported
Taxonomic identifieri366394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001108: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi366394.Smed_2631.

Structurei

3D structure databases

ProteinModelPortaliA6UCT1.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiHVLAAIC.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A6UCT1-1 [UniParc]FASTAAdd to Basket

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MAARNETLTE YNRRRDFTRT KEPKGTVARR SGNRMRFLVQ KHAATRLHYD    50
FRLEWEGVLK SWAVTRGPSL NPEDKRLAVR TEDHPLAYGD FEGTIPKGEY 100
GGGTVMLWDT GWWEPEDDPS KALRKGKLSF KLHGSRMKGG WALVRMRPRE 150
GEKRENWLLV KETDEIASKD GESLINENIT SVVTGRTMEE IAEGRGEKRS 200
RVWHSNKSTA ANLRAGAVAE DGNARKRPTR KPSGKLPTFR APQLATLVTQ 250
VPVGDAWLNE AKFDGYRLVC ALGGGTARCY TRNGLDWTEK FPVIAAALAE 300
LDCRSALIDG EVVALSEGGS TFSALQKALA TGASTRLYAF DLIELDGKDL 350
SRKPLVERKE KLEALLQTLG TTSTIQFSEH VRGNGEHVLA AICKAGQEGI 400
IAKEANAPYR SGRTRSWLKV KCTKRQEFVI GGYSLSDKKG RAFASLIVGT 450
FEGGKLIYRG GVGTGFSKKT MEDLAAAFAS RKRETSPFDS IPRERMRHSV 500
WLKPDLVAEV DFAEFTAEGH IRHGSFEGLR EDKEAKAVKL ETSKPAEVES 550
GTTTKGKSTT KARRTSAAQG DADVLGIRIS HPDRVLFKGQ GITKIDLARY 600
YAIVADRMLP FAADHPVSLV RCPQGGERQC FFQKHASDGF PDAIREVPIT 650
ESSGDTEDYM YIHDAKGLVA AVQMGTLEFH IWGARTDRLE KPDRLVFDLD 700
PDPSVDFATV KAAAVELRDE LAGIGLKTVP MVTGGKGVHV IVPLRPHAEW 750
DEVKGFAKAL AQSFAERDPD HFVATMSKAK RKGRIFIDWL RNDRGATAIA 800
PYSTRARAGG PVATPVGWEE LESLDAANGF HIPEILARIE AGTDPWRDIG 850
KISQSLTKKI LNSVA 865
Length:865
Mass (Da):95,409
Last modified:August 21, 2007 - v1
Checksum:i23C03684C3E2D7E1
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000738 Genomic DNA. Translation: ABR61461.1.
RefSeqiYP_001328296.1. NC_009636.1.

Genome annotation databases

EnsemblBacteriaiABR61461; ABR61461; Smed_2631.
GeneIDi5323500.
KEGGismd:Smed_2631.
PATRICi23624399. VBISinMed134228_5828.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000738 Genomic DNA. Translation: ABR61461.1 .
RefSeqi YP_001328296.1. NC_009636.1.

3D structure databases

ProteinModelPortali A6UCT1.
ModBasei Search...

Protein-protein interaction databases

STRINGi 366394.Smed_2631.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABR61461 ; ABR61461 ; Smed_2631 .
GeneIDi 5323500.
KEGGi smd:Smed_2631.
PATRICi 23624399. VBISinMed134228_5828.

Phylogenomic databases

eggNOGi COG3285.
HOGENOMi HOG000222509.
KOi K01971.
OMAi HVLAAIC.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci SMED366394:GJAL-2673-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete sequence of Sinorhizobium medicae WSM419 chromosome."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Reeve W.G., Richardson P.
    Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WSM419.

Entry informationi

Entry nameiA6UCT1_SINMW
AccessioniPrimary (citable) accession number: A6UCT1
Entry historyi
Integrated into UniProtKB/TrEMBL: August 21, 2007
Last sequence update: August 21, 2007
Last modified: May 14, 2014
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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