A6UBB5 (A6UBB5_SINMW) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glycoside hydrolase family 25 EMBL ABR60945.1

Gene names

Ordered Locus Names:

Smed_2112

Organism

Sinorhizobium medicae (strain WSM419) (Ensifer medicae) [Complete proteome] [HAMAP]

Taxonomic identifier

366394 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium

Protein attributes

Sequence length	261 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Predicted

Ontologies

Keywords
Domain	Signal EMBL ABR60945.1
Molecular function	Hydrolase EMBL ABR60945.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	cell wall macromolecule catabolic process Inferred from electronic annotation. Source: InterPro peptidoglycan catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	cation binding Inferred from electronic annotation. Source: InterPro lysozyme activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 21	21	Potential EMBL ABR60945.1
	Chain	22 – 261	240	Potential EMBL ABR60945.1		PRO_5000257544

Sequences

	Sequence		Length	Mass (Da)
	A6UBB5 [UniParc]. Last modified August 21, 2007. Version 1. Checksum: EE13823263C42784	FASTA	261	30,002
	10 20 30 40 50 60 MRRLFVALLP IAAILSSCTS TDYDLIKTAS IQPRFHDTDP QDFGGNTPHH HNVHGIDVSK 70 80 90 100 110 120 WNGDIDWRKV KNSGVSFAFI KATEGKDRVD ARFHEYWPQA RAAGIAYAPY HFYYFCSTAD 130 140 150 160 170 180 AQANWFIANV PKSAVYLPPV LDVEWNGESK TCRTRPAPET VRSEMKRFMD RLEAHYGKRP 190 200 210 220 230 240 IIYTSVDFHR DNLVGAFNDY HFWVRSVAKH PKDIYVDRRW AFWQYTSTGV IPGIQGSTDI 250 260 NAFAGSHRNW KKWVATVSQA R

References

[1]

"Complete sequence of Sinorhizobium medicae WSM419 chromosome." Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Reeve W.G., Richardson P. Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: WSM419.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000738 Genomic DNA. Translation: ABR60945.1.
RefSeq	YP_001327780.1. NC_009636.1.
3D structure databases
ProteinModelPortal	A6UBB5.
ModBase	Search...
Protein-protein interaction databases
STRING	A6UBB5.
Protein family/group databases
CAZy	GH25. Glycoside Hydrolase Family 25.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5322972.
GenomeReviews	Gene locus Smed_2112 in contig CP000738_GR.
KEGG	smd:Smed_2112.
PATRIC	23623269. VBISinMed134228_5272.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3757.
HOGENOM	HBG580490.
OMA	TCRTRPA.
ProtClustDB	CLSK886410.
Enzyme and pathway databases
BioCyc	SMED366394:SMED_2112-MONOMER.
Family and domain databases
InterPro	IPR002053. Glyco_hydro_25. IPR018077. Glyco_hydro_fam25_subgr. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. [Graphical view]
Gene3D	G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
KO	K07273.
Pfam	PF01183. Glyco_hydro_25. 1 hit. [Graphical view]
SMART	SM00641. Glyco_25. 1 hit. [Graphical view]
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit.
ProtoNet	Search...

Entry information

Entry name

A6UBB5_SINMW

Accession

Primary (citable) accession number: A6UBB5

Entry history

Integrated into UniProtKB/TrEMBL:	August 21, 2007
Last sequence update:	August 21, 2007
Last modified:	December 14, 2011
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)