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Protein
Submitted name:

Two component transcriptional regulator, winged helix family

Gene

Smed_0124

Organism
Sinorhizobium medicae (strain WSM419) (Ensifer medicae)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationSAAS annotation, Two-component regulatory systemSAAS annotation

Keywords - Ligandi

DNA-bindingSAAS annotation

Enzyme and pathway databases

BioCyciSMED366394:GJAL-126-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Two component transcriptional regulator, winged helix familyImported
Gene namesi
Ordered Locus Names:Smed_0124Imported
OrganismiSinorhizobium medicae (strain WSM419) (Ensifer medicae)Imported
Taxonomic identifieri366394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
Proteomesi
  • UP000001108 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi366394.Smed_0124.

Structurei

3D structure databases

ProteinModelPortaliA6U5Q4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini4 – 120117Response regulatoryInterPro annotationAdd
BLAST
Domaini129 – 22799OmpR/PhoB-type DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains OmpR/PhoB-type DNA-binding domain.SAAS annotation
Contains response regulatory domain.SAAS annotation

Phylogenomic databases

eggNOGiENOG4105CK6. Bacteria.
COG0745. LUCA.
HOGENOMiHOG000034819.
KOiK07657.
OMAiMAMRYEG.
OrthoDBiPOG091H02GJ.

Family and domain databases

CDDicd00383. trans_reg_C. 1 hit.
Gene3Di1.10.10.10. 1 hit.
InterProiIPR011006. CheY-like_superfamily.
IPR001867. OmpR/PhoB-type_DNA-bd.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR011879. Sig_transdc_resp-reg_PhoB.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00072. Response_reg. 1 hit.
PF00486. Trans_reg_C. 1 hit.
[Graphical view]
SMARTiSM00448. REC. 1 hit.
SM00862. Trans_reg_C. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF52172. SSF52172. 1 hit.
TIGRFAMsiTIGR02154. PhoB. 1 hit.
PROSITEiPS51755. OMPR_PHOB. 1 hit.
PS50110. RESPONSE_REGULATORY. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A6U5Q4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLPKIAVVED EEALSVLLRY NLEAEGFEVD TILRGDEAEI RLQERLPDLL
60 70 80 90 100
ILDWMLPGVS GIELCRRLRQ RPETERLPII MLTARGEESE RVRGLATGAD
110 120 130 140 150
DYVVKPFSTP ELMARVKAML RRAKPEVLST LLRCGDIELD RETHRVHRRS
160 170 180 190 200
REVRLGPTEF RLLEFLMSSP GRVFSRSQLL DGVWGHDIYV DERTVDVHVG
210 220
RLRKALNFSN MPDVIRTVRG AGYSLES
Length:227
Mass (Da):26,018
Last modified:August 21, 2007 - v1
Checksum:i94714B79CA66ACE0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000738 Genomic DNA. Translation: ABR58984.1.
RefSeqiWP_003530178.1. NC_009636.1.
YP_001325819.1. NC_009636.1.

Genome annotation databases

EnsemblBacteriaiABR58984; ABR58984; Smed_0124.
GeneIDi5320953.
KEGGismd:Smed_0124.
PATRICi23619025. VBISinMed134228_3182.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000738 Genomic DNA. Translation: ABR58984.1.
RefSeqiWP_003530178.1. NC_009636.1.
YP_001325819.1. NC_009636.1.

3D structure databases

ProteinModelPortaliA6U5Q4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi366394.Smed_0124.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABR58984; ABR58984; Smed_0124.
GeneIDi5320953.
KEGGismd:Smed_0124.
PATRICi23619025. VBISinMed134228_3182.

Phylogenomic databases

eggNOGiENOG4105CK6. Bacteria.
COG0745. LUCA.
HOGENOMiHOG000034819.
KOiK07657.
OMAiMAMRYEG.
OrthoDBiPOG091H02GJ.

Enzyme and pathway databases

BioCyciSMED366394:GJAL-126-MONOMER.

Family and domain databases

CDDicd00383. trans_reg_C. 1 hit.
Gene3Di1.10.10.10. 1 hit.
InterProiIPR011006. CheY-like_superfamily.
IPR001867. OmpR/PhoB-type_DNA-bd.
IPR016032. Sig_transdc_resp-reg_C-effctor.
IPR011879. Sig_transdc_resp-reg_PhoB.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00072. Response_reg. 1 hit.
PF00486. Trans_reg_C. 1 hit.
[Graphical view]
SMARTiSM00448. REC. 1 hit.
SM00862. Trans_reg_C. 1 hit.
[Graphical view]
SUPFAMiSSF46894. SSF46894. 1 hit.
SSF52172. SSF52172. 1 hit.
TIGRFAMsiTIGR02154. PhoB. 1 hit.
PROSITEiPS51755. OMPR_PHOB. 1 hit.
PS50110. RESPONSE_REGULATORY. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiA6U5Q4_SINMW
AccessioniPrimary (citable) accession number: A6U5Q4
Entry historyi
Integrated into UniProtKB/TrEMBL: August 21, 2007
Last sequence update: August 21, 2007
Last modified: September 7, 2016
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.