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Protein

Uncharacterized HTH-type transcriptional regulator Smed_0045

Gene

Smed_0045

Organism
Sinorhizobium medicae (strain WSM419) (Ensifer medicae)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi30 – 4920H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-3261-MONOMER.
RETL1328306-WGS:GSTH-377-MONOMER.
RETL1328306-WGS:GSTH-7003-MONOMER.
SMED366394:GJAL-45-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator Smed_0045
Gene namesi
Ordered Locus Names:Smed_0045
OrganismiSinorhizobium medicae (strain WSM419) (Ensifer medicae)
Taxonomic identifieri366394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
Proteomesi
  • UP000001108 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 139139Uncharacterized HTH-type transcriptional regulator Smed_0045PRO_0000310443Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi366394.Smed_0045.

Structurei

3D structure databases

ProteinModelPortaliA6U5H5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini19 – 7355HTH cro/C1-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH cro/C1-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108WRK. Bacteria.
COG1396. LUCA.
HOGENOMiHOG000231469.
OMAiQIANTQN.
OrthoDBiPOG091H054U.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A6U5H5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIENKKKPNP IDIHVGSRIR LRRTMLGMSQ EKLGESLGIT FQQIQKYEKG
60 70 80 90 100
TNRVGASRLQ NISQILNVPV SFFFEDAPGD GGGTGPGMAE ASSSNYVVDF
110 120 130
LSSSEGLQLN RAFVKISDPK VRRKLVDLVK ALAAEAESE
Length:139
Mass (Da):15,209
Last modified:August 21, 2007 - v1
Checksum:iE8E9C728F85A59FC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L13845 Genomic DNA. Translation: AAB81868.1.
CP000738 Genomic DNA. Translation: ABR58905.1.
RefSeqiWP_003527670.1. NC_009636.1.
YP_001325740.1. NC_009636.1.

Genome annotation databases

EnsemblBacteriaiABR58905; ABR58905; Smed_0045.
GeneIDi5320872.
KEGGismd:Smed_0045.
PATRICi23618855. VBISinMed134228_3099.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L13845 Genomic DNA. Translation: AAB81868.1.
CP000738 Genomic DNA. Translation: ABR58905.1.
RefSeqiWP_003527670.1. NC_009636.1.
YP_001325740.1. NC_009636.1.

3D structure databases

ProteinModelPortaliA6U5H5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi366394.Smed_0045.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABR58905; ABR58905; Smed_0045.
GeneIDi5320872.
KEGGismd:Smed_0045.
PATRICi23618855. VBISinMed134228_3099.

Phylogenomic databases

eggNOGiENOG4108WRK. Bacteria.
COG1396. LUCA.
HOGENOMiHOG000231469.
OMAiQIANTQN.
OrthoDBiPOG091H054U.

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-3261-MONOMER.
RETL1328306-WGS:GSTH-377-MONOMER.
RETL1328306-WGS:GSTH-7003-MONOMER.
SMED366394:GJAL-45-MONOMER.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY045_SINMW
AccessioniPrimary (citable) accession number: A6U5H5
Secondary accession number(s): Q52911
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 13, 2007
Last sequence update: August 21, 2007
Last modified: September 7, 2016
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.