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Protein

Uncharacterized HTH-type transcriptional regulator Smed_0045

Gene

Smed_0045

Organism
Sinorhizobium medicae (strain WSM419) (Ensifer medicae)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi30 – 4920H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-3261-MONOMER.
RETL1328306-WGS:GSTH-377-MONOMER.
RETL1328306-WGS:GSTH-7003-MONOMER.
SMED366394:GJAL-45-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator Smed_0045
Gene namesi
Ordered Locus Names:Smed_0045
OrganismiSinorhizobium medicae (strain WSM419) (Ensifer medicae)
Taxonomic identifieri366394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
Proteomesi
  • UP000001108 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 139139Uncharacterized HTH-type transcriptional regulator Smed_0045PRO_0000310443Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi366394.Smed_0045.

Structurei

3D structure databases

ProteinModelPortaliA6U5H5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini19 – 7355HTH cro/C1-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH cro/C1-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108WRK. Bacteria.
COG1396. LUCA.
HOGENOMiHOG000231469.
OMAiQIANTQN.
OrthoDBiEOG6R5C6G.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A6U5H5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIENKKKPNP IDIHVGSRIR LRRTMLGMSQ EKLGESLGIT FQQIQKYEKG
60 70 80 90 100
TNRVGASRLQ NISQILNVPV SFFFEDAPGD GGGTGPGMAE ASSSNYVVDF
110 120 130
LSSSEGLQLN RAFVKISDPK VRRKLVDLVK ALAAEAESE
Length:139
Mass (Da):15,209
Last modified:August 21, 2007 - v1
Checksum:iE8E9C728F85A59FC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L13845 Genomic DNA. Translation: AAB81868.1.
CP000738 Genomic DNA. Translation: ABR58905.1.
RefSeqiWP_003527670.1. NC_009636.1.
YP_001325740.1. NC_009636.1.

Genome annotation databases

EnsemblBacteriaiABR58905; ABR58905; Smed_0045.
GeneIDi5320872.
KEGGismd:Smed_0045.
PATRICi23618855. VBISinMed134228_3099.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L13845 Genomic DNA. Translation: AAB81868.1.
CP000738 Genomic DNA. Translation: ABR58905.1.
RefSeqiWP_003527670.1. NC_009636.1.
YP_001325740.1. NC_009636.1.

3D structure databases

ProteinModelPortaliA6U5H5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi366394.Smed_0045.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABR58905; ABR58905; Smed_0045.
GeneIDi5320872.
KEGGismd:Smed_0045.
PATRICi23618855. VBISinMed134228_3099.

Phylogenomic databases

eggNOGiENOG4108WRK. Bacteria.
COG1396. LUCA.
HOGENOMiHOG000231469.
OMAiQIANTQN.
OrthoDBiEOG6R5C6G.

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-3261-MONOMER.
RETL1328306-WGS:GSTH-377-MONOMER.
RETL1328306-WGS:GSTH-7003-MONOMER.
SMED366394:GJAL-45-MONOMER.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "An essential role for actA in acid tolerance of Rhizobium meliloti."
    Tiwari R.P., Reeve W.G., Dilworth M.J., Glenn A.R.
    Microbiology 142:601-610(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Complete sequence of Sinorhizobium medicae WSM419 chromosome."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Reeve W.G., Richardson P.
    Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WSM419.

Entry informationi

Entry nameiY045_SINMW
AccessioniPrimary (citable) accession number: A6U5H5
Secondary accession number(s): Q52911
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 13, 2007
Last sequence update: August 21, 2007
Last modified: November 11, 2015
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.