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Protein

NH(3)-dependent NAD(+) synthetase

Gene

nadE

Organism
Staphylococcus aureus (strain JH1)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + deamido-NAD+ + NH3 = AMP + diphosphate + NAD+.UniRule annotation

Pathwayi: NAD(+) biosynthesis

This protein is involved in step 1 of the subpathway that synthesizes NAD(+) from deamido-NAD(+) (ammonia route).UniRule annotation
Proteins known to be involved in this subpathway in this organism are:
  1. NH(3)-dependent NAD(+) synthetase (nadE)
This subpathway is part of the pathway NAD(+) biosynthesis, which is itself part of Cofactor biosynthesis.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes NAD(+) from deamido-NAD(+) (ammonia route), the pathway NAD(+) biosynthesis and in Cofactor biosynthesis.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei49 – 491UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi47 – 548ATPUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ligase

Keywords - Ligandi

ATP-binding, NAD, Nucleotide-binding

Enzyme and pathway databases

BioCyciSAUR359787:GCG4-2067-MONOMER.
UniPathwayiUPA00253; UER00333.

Names & Taxonomyi

Protein namesi
Recommended name:
NH(3)-dependent NAD(+) synthetaseUniRule annotation (EC:6.3.1.5UniRule annotation)
Gene namesi
Name:nadEUniRule annotation
Ordered Locus Names:SaurJH1_2002
OrganismiStaphylococcus aureus (strain JH1)
Taxonomic identifieri359787 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesStaphylococcaceaeStaphylococcus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 273273NH(3)-dependent NAD(+) synthetasePRO_1000077613Add
BLAST

Proteomic databases

PRIDEiA6U318.

Structurei

3D structure databases

ProteinModelPortaliA6U318.
SMRiA6U318. Positions 4-268.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the NAD synthetase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000238070.
KOiK01916.
OMAiDFVRGNI.
OrthoDBiEOG64JFM7.

Family and domain databases

Gene3Di3.40.50.620. 1 hit.
HAMAPiMF_00193. NadE.
InterProiIPR022310. NAD/GMP_synthase.
IPR003694. NAD_synthase.
IPR022926. NH(3)-dep_NAD(+)_synth.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view]
PfamiPF02540. NAD_synthase. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00552. nadE. 1 hit.

Sequencei

Sequence statusi: Complete.

A6U318-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKLQDVIVQ EMKVKKRIDS AEEIMELKQF IKNYVQSHSF IKSLVLGISG
60 70 80 90 100
GQDSTLVGKL VQMSVNELRE EGIDCTFIAV KLPYGVQKDA DEVDQALRFI
110 120 130 140 150
EPDEIVTVNI KPAVDQSVQS LKEAGIVLTD FQKGNEKARE RMKVQFSIAS
160 170 180 190 200
NRQGIVVGTD HSAENITGFY TKYGDGAADI APIFGLNKRQ GRQLLAYLGA
210 220 230 240 250
PKELYEKTPT ADLEDDKPQL PDEDALGVTY EAIDNYLEGK PVTPEEQKVI
260 270
ENHYIRNAHK RELAYTRYTW PKS
Length:273
Mass (Da):30,683
Last modified:August 21, 2007 - v1
Checksum:iEB4A022F38247F08
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000736 Genomic DNA. Translation: ABR52836.1.
RefSeqiWP_000040866.1. NC_009632.1.

Genome annotation databases

EnsemblBacteriaiABR52836; ABR52836; SaurJH1_2002.
KEGGisah:SaurJH1_2002.
PATRICi19535962. VBIStaAur98826_2053.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000736 Genomic DNA. Translation: ABR52836.1.
RefSeqiWP_000040866.1. NC_009632.1.

3D structure databases

ProteinModelPortaliA6U318.
SMRiA6U318. Positions 4-268.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiA6U318.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABR52836; ABR52836; SaurJH1_2002.
KEGGisah:SaurJH1_2002.
PATRICi19535962. VBIStaAur98826_2053.

Phylogenomic databases

HOGENOMiHOG000238070.
KOiK01916.
OMAiDFVRGNI.
OrthoDBiEOG64JFM7.

Enzyme and pathway databases

UniPathwayiUPA00253; UER00333.
BioCyciSAUR359787:GCG4-2067-MONOMER.

Family and domain databases

Gene3Di3.40.50.620. 1 hit.
HAMAPiMF_00193. NadE.
InterProiIPR022310. NAD/GMP_synthase.
IPR003694. NAD_synthase.
IPR022926. NH(3)-dep_NAD(+)_synth.
IPR014729. Rossmann-like_a/b/a_fold.
[Graphical view]
PfamiPF02540. NAD_synthase. 1 hit.
[Graphical view]
TIGRFAMsiTIGR00552. nadE. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete sequence of chromosome of Staphylococcus aureus subsp. aureus JH1."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M.
    , Hauser L., Kyrpides N., Ivanova N., Tomasz A., Richardson P.
    Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JH1.

Entry informationi

Entry nameiNADE_STAA2
AccessioniPrimary (citable) accession number: A6U318
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: August 21, 2007
Last modified: March 16, 2016
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.