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A6TSC6 (A6TSC6_ALKMQ) Unreviewed, UniProtKB/TrEMBL

Last modified October 19, 2011. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Alpha amylase, catalytic region EMBL ABR49094.1
Gene names
Ordered Locus Names:Amet_2944
OrganismAlkaliphilus metalliredigens (strain QYMF) [Complete proteome] [HAMAP]
Taxonomic identifier293826 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Alkaliphilus

Protein attributes

Sequence length631 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

cation binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
A6TSC6 [UniParc].

Last modified August 21, 2007. Version 1.
Checksum: B963CE2CCC2B5E93

FASTA63173,573
        10         20         30         40         50         60 
MNELNVLHDS QKSYFRNPFG AAECGEKIKL RVKIDTMKNI EQVFLSIVDH NGGKREISMY 

        70         80         90        100        110        120 
QIETDNESHV FETEINCPEI PGLLWYQFKL IIQGEVIYYC NNDEKLGGQG MLKWHEGHSF 

       130        140        150        160        170        180 
QITVYKAGVE VPSWFRRAVM YQIFPDRFYE GETGTKNQHV KKNSFFYGSW EDKPMYIREA 

       190        200        210        220        230        240 
ETNRIQRWEF FGGDLQGIIE KLNYLEELGI TSIYLNPVFE SPSNHRYDIG NYKKIDPLLG 

       250        260        270        280        290        300 
DSNIFERFCK EAEKRGIHII LDGVFSHTGS DSLYFNKEGN YQSLGAYQSK DSPYASWYQF 

       310        320        330        340        350        360 
DHFPDQYKSW WGIDTMPDVE EMDPSYLDYI IRDEDSVIKH WMKLGVKGWR LDVADELPSA 

       370        380        390        400        410        420 
FIKVLKKVLK ETDPQAVLIG EVWEDATNKI SHGEKREFLF GEELDSVMNY PLREALLDFF 

       430        440        450        460        470        480 
LTRGDGVTLQ ARLMKLYENY PKPYFYSLMN IIGSHDVPRA LTALAYGDHS SITDEKEVAV 

       490        500        510        520        530        540 
KRLKLLSLFQ MTFPGIPCIY YGDEAGAEGG NDPDNRRTYP WGSENEEILA WYKKITRIRR 

       550        560        570        580        590        600 
DHEVFVEGDW YSPYGDRDVY TFVRQKDGER AFVLFNRSNA EAYDLHLNNL EQLGNGVFKN 

       610        620        630 
LLISDDILEV IEGKARVRLE PLEGKVFYIK R

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References

[1]"Complete sequence of Alkaliphilus metalliredigens QYMF."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M. expand/collapse author list , Hauser L., Kyrpides N., Mikhailova N., Ye Q., Zhou J., Fields M., Richardson P.
Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: QYMF.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000724 Genomic DNA. Translation: ABR49094.1.
RefSeqYP_001320753.1. NC_009633.1.

3D structure databases

ProteinModelPortalA6TSC6.
ModBaseSearch...

Protein-protein interaction databases

STRINGA6TSC6.

Protein family/group databases

CAZyCBM34. Carbohydrate-Binding Module Family 34.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5313018.
GenomeReviewsGene locus Amet_2944 in contig CP000724_GR.
KEGGamt:Amet_2944.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0366.
HOGENOMHBG304832.
OMAHDNEETS.
ProtClustDBCLSK853548.

Family and domain databases

InterProIPR015902. Alpha_amylase.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
Gene3DG3DSA:2.60.40.1180. Glyco_hydro_13_b. 1 hit.
G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
G3DSA:2.60.40.10. Ig-like_fold. 1 hit.
PANTHERPTHR10357. Alpha_amylase. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
SSF81296. Ig_E-set. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA6TSC6_ALKMQ
AccessionPrimary (citable) accession number: A6TSC6
Entry history
Integrated into UniProtKB/TrEMBL: August 21, 2007
Last sequence update: August 21, 2007
Last modified: October 19, 2011
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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