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A6QZ20 (A6QZ20_AJECN) Unreviewed, UniProtKB/TrEMBL

Last modified March 6, 2013. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length972 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Sequences

Sequence LengthMass (Da)Tools
A6QZ20 [UniParc].

Last modified August 21, 2007. Version 1.
Checksum: 75EE296AB02C7DA5

FASTA972110,245
        10         20         30         40         50         60 
MDSDGEGEPN GSRQQDSTAN DLDEKYPNPP RNHSPTLPFH DLFLTLFNPL NENKKRPTGP 

        70         80         90        100        110        120 
AAARRKVGPH GQGAAVHLSP QERRRDIIQR FISRWRKEVG DDIFPAFRLI IPEKDRDRAM 

       130        140        150        160        170        180 
YGLKEKAIGK LLVKVMKIDK NSEDGFSLLN WKVPGQSFAS RMAGDFAGRC FEVISKRPLR 

       190        200        210        220        230        240 
TEVGDMTIDE VNEQLDKLSA ASKEDEQVPI LAYFYRRMNP EELMWLIRII LRQMKVGATE 

       250        260        270        280        290        300 
RTFFSIWHPD AEALFSISSS LRRVCWQLYN TDVRLEGDET KVTLMQCFQP QLAQFQMQSF 

       310        320        330        340        350        360 
EHMIRRMRLT EDDPTFWIEE KLDGERIQLH MKPDDSIPGG KRFGFWSRKA KEYTYLYGNG 

       370        380        390        400        410        420 
LLDENGALTR HLQDAFADGV QSIILDGEMI TWDPEHDAIV PFGTLKTAAL AEQRNPFSTG 

       430        440        450        460        470        480 
QRPLFRIFDI LYLNGRPLTR YTLKDRRKAL EASVIPVHRR FEIHTYDIGH SATDIDPLLR 

       490        500        510        520        530        540 
KVVAEASEGL VLKNPNSPYR LNERHDDWMK VKPEYMTDFG ESLDCIVIGG YYGSGRRGGA 

       550        560        570        580        590        600 
LSSFLCGLRV DGSHSKTGDH PTKCYSFCKV GGGFTAADYA NIRHHTDGKW MDWDPKRPPT 

       610        620        630        640        650        660 
EYIELAGGDL QYERPDVWIK PEDSVVLCVK ASSVTSTDQF RLGLTVRFPR FKRLRMDKDW 

       670        680        690        700        710        720 
RSALSIQEFM DLKSNVEREV KEKEFKVDDS RKVRHRKAIK KPLTIAGYDG GKKLEYVGPS 

       730        740        750        760        770        780 
GTLFDGLNFF IMTESVHQPK KTKAQLEQLV KANGGKIYQT NNVAENTICI ADRTDQEEEI 

       790        800        810        820        830        840 
AEHVDKYSDS YARDIDASEL KKLLDSMHPA PALPPSSLSE LESQLESHSL NERKPATPTI 

       850        860        870        880        890        900 
SNTSTCPGWL FKGLVIYFAM PPSLSNEGNG KIPHVLPQRL YLASNLVKFA GGEVITDDDG 

       910        920        930        940        950        960 
DMKDARITHV VVDSNPPGDK AAMAAADVAG IRRAISSRAG VGKRIPHIVG VEWVEESWGE 

       970 
RTLVDEERFT PK

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References

[1]"Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives."
Sharpton T.J., Stajich J.E., Rounsley S.D., Gardner M.J., Wortman J.R., Jordar V.S., Maiti R., Kodira C.D., Neafsey D.E., Zeng Q., Hung C.-Y., McMahan C., Muszewska A., Grynberg M., Mandel M.A., Kellner E.M., Barker B.M., Galgiani J.N. expand/collapse author list , Orbach M.J., Kirkland T.N., Cole G.T., Henn M.R., Birren B.W., Taylor J.W.
Genome Res. 19:1722-1731(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NAm1 / WU24.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CH476656 Genomic DNA. Translation: EDN06024.1.
RefSeqXP_001542456.1. XM_001542406.1.

3D structure databases

ModBaseSearch...

Proteomic databases

PRIDEA6QZ20.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5448693.
KEGGaje:HCAG_02627.

Phylogenomic databases

KOK10777.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF52113. BRCT. 1 hit.
SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameA6QZ20_AJECN
AccessionPrimary (citable) accession number: A6QZ20
Entry history
Integrated into UniProtKB/TrEMBL: August 21, 2007
Last sequence update: August 21, 2007
Last modified: March 6, 2013
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info