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Protein
Submitted name:

Goose-type lysozyme

Gene

lysG

Organism
Salmo salar (Atlantic salmon)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei88 – 881UniRule annotation
Active sitei101 – 1011UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BRENDAi3.2.1.17. 5538.

Protein family/group databases

CAZyiGH23. Glycoside Hydrolase Family 23.

Names & Taxonomyi

Protein namesi
Submitted name:
Goose-type lysozymeImported
Submitted name:
Lysozyme gImported
Gene namesi
Name:lysGImported
Synonyms:LYGImported
OrganismiSalmo salar (Atlantic salmon)Imported
Taxonomic identifieri8030 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiProtacanthopterygiiSalmoniformesSalmonidaeSalmoninaeSalmo

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2121Sequence analysisAdd
BLAST
Chaini22 – 200179Sequence analysisPRO_5005899462Add
BLAST

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3MGWX-ray1.75A22-200[»]
4G9SX-ray0.95A22-200[»]
SMRiA6PZ97. Positions 19-200.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini67 – 174108SLTInterPro annotationAdd
BLAST

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

HOVERGENiHBG006299.

Family and domain databases

InterProiIPR002152. Glyco_hydro_23.
IPR023346. Lysozyme-like_dom.
IPR008258. Transglycosylase_SLT_dom_1.
[Graphical view]
PfamiPF01464. SLT. 1 hit.
[Graphical view]
PIRSFiPIRSF001065. Lysozyme_g. 1 hit.
PRINTSiPR00749. LYSOZYMEG.
SUPFAMiSSF53955. SSF53955. 1 hit.

Sequencei

Sequence statusi: Complete.

A6PZ97-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGVGVGIGGF ITFLTLASCF GDITKVDTSG ASEITARQDK LTLQGVDASH
60 70 80 90 100
KLAEHDLVRM NKYKELITRV GQKHGLDPAI IAGIISRESR AGSALDHGWG
110 120 130 140 150
DHGKGFGLMQ VDKRYHKIVG AWDSEKHISQ GTEILIEFIR RIQAKFPAWP
160 170 180 190 200
KEHQLKGGIS AYNAGDKNVR TYERMDVGTT GGDYSNDVVA RSQWFKSQGY
Length:200
Mass (Da):21,964
Last modified:August 21, 2007 - v1
Checksum:i9D7BD1F650384B11
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT049628 mRNA. Translation: ACI69429.1.
BT058138 mRNA. Translation: ACN09851.1.
BT058488 mRNA. Translation: ACN10201.1.
BT059838 mRNA. Translation: ACN12198.1.
BT060195 mRNA. Translation: ACN12555.1.
AM493682 Genomic DNA. Translation: CAM35431.1.
RefSeqiXP_014055605.1. XM_014200130.1.
UniGeneiSsa.5853.

Genome annotation databases

GeneIDi100136420.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BT049628 mRNA. Translation: ACI69429.1.
BT058138 mRNA. Translation: ACN09851.1.
BT058488 mRNA. Translation: ACN10201.1.
BT059838 mRNA. Translation: ACN12198.1.
BT060195 mRNA. Translation: ACN12555.1.
AM493682 Genomic DNA. Translation: CAM35431.1.
RefSeqiXP_014055605.1. XM_014200130.1.
UniGeneiSsa.5853.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3MGWX-ray1.75A22-200[»]
4G9SX-ray0.95A22-200[»]
SMRiA6PZ97. Positions 19-200.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

CAZyiGH23. Glycoside Hydrolase Family 23.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi100136420.

Phylogenomic databases

HOVERGENiHBG006299.

Enzyme and pathway databases

BRENDAi3.2.1.17. 5538.

Family and domain databases

InterProiIPR002152. Glyco_hydro_23.
IPR023346. Lysozyme-like_dom.
IPR008258. Transglycosylase_SLT_dom_1.
[Graphical view]
PfamiPF01464. SLT. 1 hit.
[Graphical view]
PIRSFiPIRSF001065. Lysozyme_g. 1 hit.
PRINTSiPR00749. LYSOZYMEG.
SUPFAMiSSF53955. SSF53955. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "A cold-active salmon goose-type lysozyme with high heat tolerance."
    Kyomuhendo P., Myrnes B., Nilsen I.W.
    Cell. Mol. Life Sci. 64:2841-2847(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: Head kidneyImported.
  3. "Salmo salar full-length cDNAs."
    cGRASP (B.F. Koop & W.S. Davidson)
    Leong J., von Schalburg K., Cooper G., Moore R., Holt R., Davidson W.S., Koop B.F.
    Submitted (FEB-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: Mixed brainImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: BrainImported.
  5. "Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome."
    Leong J.S., Jantzen S.G., von Schalburg K.R., Cooper G.A., Messmer A.M., Liao N.Y., Munro S., Moore R., Holt R.A., Jones S.J., Davidson W.S., Koop B.F.
    BMC Genomics 11:279-279(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: BrainImported and Head kidneyImported.
  6. Cited for: X-RAY CRYSTALLOGRAPHY (1.75 ANGSTROMS) OF 22-200.
  7. cGRASP (B.F. Koop & W.S. Davidson)
    Submitted (AUG-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: BrainImported and Head kidneyImported.
  8. "Structural basis of bacterial defense against g-type lysozyme-based innate immunity."
    Leysen S., Vanderkelen L., Weeks S.D., Michiels C.W., Strelkov S.V.
    Cell. Mol. Life Sci. 70:1113-1122(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (0.95 ANGSTROMS) OF 22-200.

Entry informationi

Entry nameiA6PZ97_SALSA
AccessioniPrimary (citable) accession number: A6PZ97
Entry historyi
Integrated into UniProtKB/TrEMBL: August 21, 2007
Last sequence update: August 21, 2007
Last modified: February 17, 2016
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.