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Protein

Leucine-rich repeat-containing protein 37A2

Gene

LRRC37A2

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Leucine-rich repeat-containing protein 37A2
Gene namesi
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 17

Organism-specific databases

HGNCiHGNC:32404. LRRC37A2.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini36 – 15821547ExtracellularSequence analysisAdd
BLAST
Transmembranei1583 – 160321HelicalSequence analysisAdd
BLAST
Topological domaini1604 – 170097CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA162394530.

Polymorphism and mutation databases

BioMutaiLRRC37A2.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 3535Sequence analysisAdd
BLAST
Chaini36 – 17001665Leucine-rich repeat-containing protein 37A2PRO_0000337080Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi296 – 2961N-linked (GlcNAc...)Sequence analysis
Glycosylationi1079 – 10791N-linked (GlcNAc...)Sequence analysis

Keywords - PTMi

Glycoprotein

Proteomic databases

EPDiA6NM11.
PaxDbiA6NM11.
PRIDEiA6NM11.

PTM databases

iPTMnetiA6NM11.
PhosphoSiteiA6NM11.

Expressioni

Gene expression databases

BgeeiA6NM11.
CleanExiHS_LRRC37A2.
GenevisibleiA6NM11. HS.

Organism-specific databases

HPAiHPA042121.
HPA042701.
HPA043056.
HPA045090.
HPA049080.

Interactioni

Protein-protein interaction databases

IntActiA6NM11. 4 interactions.
STRINGi9606.ENSP00000333071.

Structurei

3D structure databases

ProteinModelPortaliA6NM11.
SMRiA6NM11. Positions 834-1044.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati137 – 16024LRR 1Add
BLAST
Repeati230 – 25324LRR 2Add
BLAST
Repeati267 – 29024LRR 3Add
BLAST
Repeati864 – 88724LRR 4Add
BLAST
Repeati888 – 91124LRR 5Add
BLAST
Repeati912 – 93524LRR 6Add
BLAST
Repeati937 – 95923LRR 7Add
BLAST
Repeati963 – 98725LRR 8Add
BLAST
Repeati1002 – 102726LRR 9Add
BLAST
Repeati1124 – 114623LRR 10Add
BLAST

Sequence similaritiesi

Belongs to the LRRC37A family.Curated
Contains 10 LRR (leucine-rich) repeats.Curated

Keywords - Domaini

Leucine-rich repeat, Repeat, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IJNR. Eukaryota.
ENOG410YV94. LUCA.
GeneTreeiENSGT00530000063282.
HOGENOMiHOG000113269.
HOVERGENiHBG100009.
InParanoidiA6NM11.
OMAiPENTINQ.
OrthoDBiEOG7WMCJ1.
PhylomeDBiA6NM11.
TreeFamiTF341959.

Family and domain databases

Gene3Di3.80.10.10. 1 hit.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
IPR032754. LRRC37_N.
IPR015753. LRRC37A/B-like.
IPR029423. LRRC37AB_C.
[Graphical view]
PANTHERiPTHR23045. PTHR23045. 1 hit.
PfamiPF13855. LRR_8. 1 hit.
PF15779. LRRC37. 6 hits.
PF14914. LRRC37AB_C. 1 hit.
[Graphical view]
SMARTiSM00369. LRR_TYP. 4 hits.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 1 hit.
PROSITEiPS51450. LRR. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A6NM11-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSAQCPALV CVMSRLRFWG PWPLLMWQLL WLLVKEAQPL EWVKDPLQLT
60 70 80 90 100
SNPLGPPDSW SSHSSHFPRE SPHAPTLPAD PWDFDHLGPS ASSEMPAPPQ
110 120 130 140 150
ESTENLVPFL DTWDSAGEQP LEPEQFLASQ QDLKDKLSPQ ERLPVSPKKL
160 170 180 190 200
KKDPAQRWSL AEIIGITRQL STPQSQKQTL QNEYSSTDTP YPGSLPPELR
210 220 230 240 250
VKSDEPPGPS EQVGPSQFHL EPETQNPETL EDIQSSSLQQ EAPAQLPQLL
260 270 280 290 300
EEEPSSMQQE APALPPESSM ESLTLPNHEV SVQPPGEDQA YYHLPNITVK
310 320 330 340 350
PADVEVTITS EPTNETESSQ AQQETPIQFP EEVEPSATQQ EAPIEPPVPP
360 370 380 390 400
MEHELSISEQ QQPVQPSESP REVESSPTQQ ETPGQPPEHH EVTVSPPGHH
410 420 430 440 450
QTHHLASPSV SVKPPDVQLT IAAEPSAEVG TSLVHQEATT RLSGSGNDVE
460 470 480 490 500
PPAIQHGGPP LLPESSEEAG PLAVQQETSF QSPEPINNEN PSPTQQEAAA
510 520 530 540 550
EHPQTAEEGE SSLTHQEAPA QTPEFPNVVV AQPPEHSHLT QATVQPLDLG
560 570 580 590 600
FTITPESKTE VELSPTMKET PTQPPKKVVP QLRVYQGVTN PTPGQDQAQH
610 620 630 640 650
PVSPSVTVQL LDLGLTITPE PTTEVGHSTP PKRTIVSPKH PEVTLPHPDQ
660 670 680 690 700
VQTQHSHLTR ATVQPLDLGF TITPKSMTEV EPSTALMTTA PPPGHPEVTL
710 720 730 740 750
PPSDKGQAQH SHLTQATVQP LDLELTITTK PTTEVKPSPT TEETSTQPPD
760 770 780 790 800
LGLAIIPEPT TETRHSTALE KTTAPRPDRV QTLHRSLTEV TGPPTELEPA
810 820 830 840 850
QDSLVQSESY TQNKALTAPE EHKASTSTNI CELCTCGDEM LSCIDLNPEQ
860 870 880 890 900
RLRQVPVPEP NTHNGTFTIL NFQGNYISYI DGNVWKAYSW TEKLILRENN
910 920 930 940 950
LTELHKDSFE GLLSLQYLDL SCNKIQSIER HTFEPLPFLK FINLSCNVIT
960 970 980 990 1000
ELSFGTFQAW HGMQFLHKLI LNHNPLTTVE DPYLFKLPAL KYLDMGTTLV
1010 1020 1030 1040 1050
PLTTLKNILM MTVELEKLIL PSHMACCLCQ FKNSIEAVCK TVKLHCNSAC
1060 1070 1080 1090 1100
LTNTTHCPEE ASVGNPEGAF MKVLQARKNY TSTELIVEPE EPSDSSGINL
1110 1120 1130 1140 1150
SGFGSEQLDT NDESDFISTL SYILPYFSAV NLDVKSLLLP FIKLPTTGNS
1160 1170 1180 1190 1200
LAKIQTVGQN RQRVKRVLMG PRSIQKRHFK EVGRQSIRRE QGAQASVENA
1210 1220 1230 1240 1250
AEEKRLGSPA PREVEQPHTQ QGPEKLAGNA VYTKPSFTQE HKAAVSVLKP
1260 1270 1280 1290 1300
FSKGAPSTSS PAKALPQVRD RWKDLTHAIS ILESAKARVT NTKTSKPIVH
1310 1320 1330 1340 1350
ARKKYRFHKT RSHVTHRTPK VKKSPKVRKK SYLSRLMLAN RLPFSAAKSL
1360 1370 1380 1390 1400
INSPSQGAFS SLGDLSPQEN PFLEVSAPSE HFIENNNTKH TTARNAFEEN
1410 1420 1430 1440 1450
DFMENTNMPE GTISENTNYN HPHEADSAGT AFNLGPTVKQ TETKWEYNNV
1460 1470 1480 1490 1500
GTDLSPEPKS FNYPLLSSPG DQFEIQLTQQ LQSLIPNNNV RRLIAHVIRT
1510 1520 1530 1540 1550
LKMDCSGAHV QVTCAKLISR TGHLMKLLSG QQEVKASKIE WDTDQWKIEN
1560 1570 1580 1590 1600
YINESTEAQS EQKEKSLELK KEVPGYGYTD KLILALIVTG ILTILIILFC
1610 1620 1630 1640 1650
LIVICCHRRS LQEDEEGFSR GIFRFLPWRG CSSRRESQDG LSSFGQPLWF
1660 1670 1680 1690 1700
KDMYKPLSAT RINNHAWKLH KKSSNEDKIL NRDPGDSEAP TEEEESEALP
Length:1,700
Mass (Da):188,393
Last modified:January 15, 2008 - v2
Checksum:iB80368373F772CDF
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti1508 – 15081A → T in AAI44428 (PubMed:15489334).Curated
Sequence conflicti1628 – 16281W → R in AAI44428 (PubMed:15489334).Curated
Sequence conflicti1686 – 16872Missing in AAI44428 (PubMed:15489334).Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti1141 – 11411F → L.1 Publication
Corresponds to variant rs151267673 [ dbSNP | Ensembl ].
VAR_070799
Natural varianti1281 – 12811I → T.1 Publication
Corresponds to variant rs62073349 [ dbSNP | Ensembl ].
VAR_070800
Natural varianti1385 – 13851N → K.1 Publication
Corresponds to variant rs1969205 [ dbSNP | Ensembl ].
VAR_070801
Natural varianti1423 – 14231H → P.1 Publication
Corresponds to variant rs201103889 [ dbSNP | Ensembl ].
VAR_070802

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC138645 Genomic DNA. No translation available.
BC144427 mRNA. Translation: AAI44428.1.
CCDSiCCDS42353.1.
RefSeqiNP_001006608.2. NM_001006607.2.
UniGeneiHs.646568.
Hs.744157.
Hs.744758.

Genome annotation databases

EnsembliENST00000333412; ENSP00000333071; ENSG00000238083.
ENST00000576629; ENSP00000459551; ENSG00000238083.
GeneIDi474170.
KEGGihsa:474170.
UCSCiuc002ikn.2. human.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC138645 Genomic DNA. No translation available.
BC144427 mRNA. Translation: AAI44428.1.
CCDSiCCDS42353.1.
RefSeqiNP_001006608.2. NM_001006607.2.
UniGeneiHs.646568.
Hs.744157.
Hs.744758.

3D structure databases

ProteinModelPortaliA6NM11.
SMRiA6NM11. Positions 834-1044.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiA6NM11. 4 interactions.
STRINGi9606.ENSP00000333071.

PTM databases

iPTMnetiA6NM11.
PhosphoSiteiA6NM11.

Polymorphism and mutation databases

BioMutaiLRRC37A2.

Proteomic databases

EPDiA6NM11.
PaxDbiA6NM11.
PRIDEiA6NM11.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000333412; ENSP00000333071; ENSG00000238083.
ENST00000576629; ENSP00000459551; ENSG00000238083.
GeneIDi474170.
KEGGihsa:474170.
UCSCiuc002ikn.2. human.

Organism-specific databases

CTDi474170.
GeneCardsiLRRC37A2.
HGNCiHGNC:32404. LRRC37A2.
HPAiHPA042121.
HPA042701.
HPA043056.
HPA045090.
HPA049080.
MIMi616556. gene.
neXtProtiNX_A6NM11.
PharmGKBiPA162394530.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IJNR. Eukaryota.
ENOG410YV94. LUCA.
GeneTreeiENSGT00530000063282.
HOGENOMiHOG000113269.
HOVERGENiHBG100009.
InParanoidiA6NM11.
OMAiPENTINQ.
OrthoDBiEOG7WMCJ1.
PhylomeDBiA6NM11.
TreeFamiTF341959.

Miscellaneous databases

ChiTaRSiLRRC37A2. human.
GenomeRNAii474170.
PROiA6NM11.
SOURCEiSearch...

Gene expression databases

BgeeiA6NM11.
CleanExiHS_LRRC37A2.
GenevisibleiA6NM11. HS.

Family and domain databases

Gene3Di3.80.10.10. 1 hit.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
IPR032754. LRRC37_N.
IPR015753. LRRC37A/B-like.
IPR029423. LRRC37AB_C.
[Graphical view]
PANTHERiPTHR23045. PTHR23045. 1 hit.
PfamiPF13855. LRR_8. 1 hit.
PF15779. LRRC37. 6 hits.
PF14914. LRRC37AB_C. 1 hit.
[Graphical view]
SMARTiSM00369. LRR_TYP. 4 hits.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 1 hit.
PROSITEiPS51450. LRR. 4 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage."
    Zody M.C., Garber M., Adams D.J., Sharpe T., Harrow J., Lupski J.R., Nicholson C., Searle S.M., Wilming L., Young S.K., Abouelleil A., Allen N.R., Bi W., Bloom T., Borowsky M.L., Bugalter B.E., Butler J., Chang J.L.
    , Chen C.-K., Cook A., Corum B., Cuomo C.A., de Jong P.J., DeCaprio D., Dewar K., FitzGerald M., Gilbert J., Gibson R., Gnerre S., Goldstein S., Grafham D.V., Grocock R., Hafez N., Hagopian D.S., Hart E., Norman C.H., Humphray S., Jaffe D.B., Jones M., Kamal M., Khodiyar V.K., LaButti K., Laird G., Lehoczky J., Liu X., Lokyitsang T., Loveland J., Lui A., Macdonald P., Major J.E., Matthews L., Mauceli E., McCarroll S.A., Mihalev A.H., Mudge J., Nguyen C., Nicol R., O'Leary S.B., Osoegawa K., Schwartz D.C., Shaw-Smith C., Stankiewicz P., Steward C., Swarbreck D., Venkataraman V., Whittaker C.A., Yang X., Zimmer A.R., Bradley A., Hubbard T., Birren B.W., Rogers J., Lander E.S., Nusbaum C.
    Nature 440:1045-1049(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 779-1700, VARIANTS LEU-1141; THR-1281; LYS-1385 AND PRO-1423.

Entry informationi

Entry nameiL37A2_HUMAN
AccessioniPrimary (citable) accession number: A6NM11
Secondary accession number(s): B7ZMC3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: January 15, 2008
Last modified: June 8, 2016
This is version 73 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 17
    Human chromosome 17: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.