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Protein

Putative stereocilin-like protein

Gene

STRCP1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Putative stereocilin-like protein
Alternative name(s):
Stereocilin pseudogene 1
Gene namesi
Name:STRCP1
Synonyms:STRCP
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Unplaced

Organism-specific databases

HGNCiHGNC:33915. STRCP1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2525Sequence analysisAdd
BLAST
Chaini26 – 17721747Putative stereocilin-like proteinPRO_0000339348Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Glycosylationi65 – 651N-linked (GlcNAc...)Sequence analysis
Glycosylationi427 – 4271N-linked (GlcNAc...)Sequence analysis
Glycosylationi476 – 4761N-linked (GlcNAc...)Sequence analysis
Glycosylationi565 – 5651N-linked (GlcNAc...)Sequence analysis

Keywords - PTMi

Glycoprotein

Proteomic databases

EPDiA6NGW2.
PaxDbiA6NGW2.
PeptideAtlasiA6NGW2.
PRIDEiA6NGW2.

PTM databases

iPTMnetiA6NGW2.

Expressioni

Organism-specific databases

HPAiHPA015731.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000401513.

Structurei

3D structure databases

ProteinModelPortaliA6NGW2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the stereocilin family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410IIWF. Eukaryota.
ENOG410ZQVX. LUCA.
HOGENOMiHOG000231838.
HOVERGENiHBG079223.
InParanoidiA6NGW2.

Family and domain databases

InterProiIPR026061. Stereocilin.
IPR026664. Stereocilin-rel.
[Graphical view]
PANTHERiPTHR23412. PTHR23412. 1 hit.
PTHR23412:SF14. PTHR23412:SF14. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

A6NGW2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALSLWPLLL LLLLLLLLSF AVTLAPTGPH SLDPGLSFLK SLLSTLDQAP
60 70 80 90 100
QGSLSRSRFF TFLANISSSF EPGRMGEGPV GEPPPLQPPA LRLHDFLVTL
110 120 130 140 150
RGSPDWEPML GLLGDMLALL GQEQTPRDFL VHQAGVLGGL VEVLLGALVP
160 170 180 190 200
GGPPTPTQPP CTRDGPSDCV LAADWLPSLL LLLEGTRWQA LVQVQPSVDP
210 220 230 240 250
TNATGLDGRE AAPHFLQGLL GLLTPTGELG SKEALWGGLL RTVGAPLYAA
260 270 280 290 300
FQEGLLRVTH SLQDEVFSIL GQPEPDTNGQ CQGGNLQQLL LWGVRHNLSW
310 320 330 340 350
DVQALGFLSG SPPPPPALLH CLSTGVPLPR ASQPSAHISP RQRRAITVEA
360 370 380 390 400
LCENHLGPAP PYSISNFSIH LLCQHTKPAT PQPHPSTTAI CQTAVWYAVS
410 420 430 440 450
WAPGAQGWLQ ACHDQFPDEF LDAICSNLSF SALSGSNRRL VKRLCAGLLP
460 470 480 490 500
PPTSCPEGLP PVPLTPDIFW GCFLENETLW AERLCGEASL QAVPPSNQAW
510 520 530 540 550
VQHVCQGPTP DVTASPPCHI GPCGERCPDG GSFLVMVCAN DTMYEVLVPF
560 570 580 590 600
WPWLAGQCRI SRGGNDTCFL EGLLGPLLPS LPPLGPSPLC LTPGPFLLGM
610 620 630 640 650
LSQLPRCQSS VPALAHPTRL HYLLRLLTFL LGPGAGGAEA QGMLGRALLL
660 670 680 690 700
SSLPDNCSFW DAFRPEGRRS VLRTIGEYLE QDEEQPTPSG FEPTVNPSSG
710 720 730 740 750
ISKMELLACF SPVLWDLLQR EKSVWALQIL VQAYLHMPPE NLQQLVLSAE
760 770 780 790 800
REAAQGFLTL MLQGKLQGKL QVPPSEEQAL GRLTALLLQR YPRLTSQLFI
810 820 830 840 850
DLSPLIPFLA VSDLMRFPPS LLANDSVLAA IRDYSPGMRP EQKEALAKRL
860 870 880 890 900
LAPELFGEVP AWPQELLWAV LPLLPHLPLE NFLQLSPHQI QALEDSWPAA
910 920 930 940 950
GLGPGHARHV LRSLVNQSVQ DGEEQVRRLG PLACFLSPEE LQSLVPLSDP
960 970 980 990 1000
TGPVERGLLE CAANGTLSPE GRVAYELLGV LRSSGGAVLS PRELRVWAPL
1010 1020 1030 1040 1050
FSQLGLRFLQ ELSEPQLRAM LPVLQGTSVT PAQAVLLLGR LLPRHDLSLE
1060 1070 1080 1090 1100
ELCSLHLLLP GLSPQTLQAI PRRVLVGACS CLAPELSRLS ACQTAALLQT
1110 1120 1130 1140 1150
FRVKDGVKNM GTTGAGPAVC IPGQQPIPTT WPDCLLPLLP LKLLQLDSLA
1160 1170 1180 1190 1200
LLANRRRYWE LPWSEQQAQF LWKKMQVPTN LTLRNLQALG TLAGGMSCEF
1210 1220 1230 1240 1250
LQQINSMVDF LEVVHMIYQL PTRVRGSLRA CIWAELQRRM AMPEPEWTTV
1260 1270 1280 1290 1300
GPELNGLDSK LLLDLPIQLM DRLSNESIML VVELVQRAPE QLLALTPLHQ
1310 1320 1330 1340 1350
AALAERALQN LAPKETPVSG EVLETLGPLV GFLGTESTRQ IPLQILLSHL
1360 1370 1380 1390 1400
SFCLGETFAT ELGWLLLQES VLGKPELWSQ DEVEQAGRLV FTLSTEAISL
1410 1420 1430 1440 1450
IPREALGPET LERLLEKQQS WEQSRVGQLC RGPQLAAKKA ALVAGVVRPA
1460 1470 1480 1490 1500
AEDLPEPVPN CADVRGTFPA ACSATQIAEM ELSDFKDCLT LFAGDPGLGP
1510 1520 1530 1540 1550
EEPRAAMGKA KWLWGPPRGF GPEQILQLGR LLIGLGDQEL QELILVDWGV
1560 1570 1580 1590 1600
LSTLGQIDGW SSTQLRIVVS SFLRQSGRHV SHLDFVHLTA LGYTLCGLRP
1610 1620 1630 1640 1650
EELQHISSWE FSQAALFLGT LHLQCSEEQL EFLAHLFVLP GGFGPISNWG
1660 1670 1680 1690 1700
PEIFTEIGTI AAGIPDLALS ALLRGQIQGV TPLAISVIPP PKFAVVFSPI
1710 1720 1730 1740 1750
QLSSLASAQA VAVTPEQMAF LSPEQRRAVA WAQHEGKESP EQQGRSTAWG
1760 1770
LQDWSRPSWS LVLTISFLGH LL
Length:1,772
Mass (Da):192,437
Last modified:July 24, 2007 - v1
Checksum:iA96B4DA8FC868F97
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC011330 Genomic DNA. No translation available.
AC018512 Genomic DNA. No translation available.
UniGeneiHs.657395.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC011330 Genomic DNA. No translation available.
AC018512 Genomic DNA. No translation available.
UniGeneiHs.657395.

3D structure databases

ProteinModelPortaliA6NGW2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000401513.

PTM databases

iPTMnetiA6NGW2.

Proteomic databases

EPDiA6NGW2.
PaxDbiA6NGW2.
PeptideAtlasiA6NGW2.
PRIDEiA6NGW2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

GeneCardsiSTRCP1.
HGNCiHGNC:33915. STRCP1.
HPAiHPA015731.
neXtProtiNX_A6NGW2.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IIWF. Eukaryota.
ENOG410ZQVX. LUCA.
HOGENOMiHOG000231838.
HOVERGENiHBG079223.
InParanoidiA6NGW2.

Family and domain databases

InterProiIPR026061. Stereocilin.
IPR026664. Stereocilin-rel.
[Graphical view]
PANTHERiPTHR23412. PTHR23412. 1 hit.
PTHR23412:SF14. PTHR23412:SF14. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Analysis of the DNA sequence and duplication history of human chromosome 15."
    Zody M.C., Garber M., Sharpe T., Young S.K., Rowen L., O'Neill K., Whittaker C.A., Kamal M., Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Kodira C.D., Madan A., Qin S., Yang X., Abbasi N., Abouelleil A.
    , Arachchi H.M., Baradarani L., Birditt B., Bloom S., Bloom T., Borowsky M.L., Burke J., Butler J., Cook A., DeArellano K., DeCaprio D., Dorris L. III, Dors M., Eichler E.E., Engels R., Fahey J., Fleetwood P., Friedman C., Gearin G., Hall J.L., Hensley G., Johnson E., Jones C., Kamat A., Kaur A., Locke D.P., Madan A., Munson G., Jaffe D.B., Lui A., Macdonald P., Mauceli E., Naylor J.W., Nesbitt R., Nicol R., O'Leary S.B., Ratcliffe A., Rounsley S., She X., Sneddon K.M.B., Stewart S., Sougnez C., Stone S.M., Topham K., Vincent D., Wang S., Zimmer A.R., Birren B.W., Hood L., Lander E.S., Nusbaum C.
    Nature 440:671-675(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Cited for: IDENTIFICATION.

Entry informationi

Entry nameiSTRCL_HUMAN
AccessioniPrimary (citable) accession number: A6NGW2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 10, 2008
Last sequence update: July 24, 2007
Last modified: July 6, 2016
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

Could be the product of a pseudogene. According to PubMed:12825070, no evidence has been tendered concerning the existence of this protein.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 15
    Human chromosome 15: entries, gene names and cross-references to MIM
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.