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Protein

Putative uncharacterized protein C9orf92

Gene

C9orf92

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Recommended name:
Putative uncharacterized protein C9orf92
Gene namesi
Name:C9orf92
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 9

Organism-specific databases

HGNCiHGNC:19054. C9orf92.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7777Putative uncharacterized protein C9orf92PRO_0000316783Add
BLAST

Proteomic databases

PRIDEiA6NGG3.

Expressioni

Gene expression databases

BgeeiA6NGG3.
GenevestigatoriA6NGG3.

Structurei

3D structure databases

ProteinModelPortaliA6NGG3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG113482.
GeneTreeiENSGT00410000028916.
HOGENOMiHOG000111651.
InParanoidiA6NGG3.
OMAiPACVGKR.
OrthoDBiEOG73806S.
TreeFamiTF354093.

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: A6NGG3-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

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        10         20         30         40         50
MARFQRTKER EEDRCSLNIY YVRNTTQGTA PACVGKRMQP SPTGKGGKCC
60 70
TVHGLTRKIH NVQPNLQSPI LSAACVD
Length:77
Mass (Da):8,520
Last modified:July 24, 2007 - v1
Checksum:i215CD74E88B64771
GO
Isoform 2 (identifier: A6NGG3-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-1: M → MELNTNIKSKKGLGRRNLKPMNGAWPPARREM

Note: No experimental confirmation available.

Show »
Length:108
Mass (Da):12,066
Checksum:iC6E476F84EA79DA1
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti27 – 271Q → R in BG220529. (PubMed:11329013)Curated
Sequence conflicti72 – 721S → P in BG220529. (PubMed:11329013)Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 11M → MELNTNIKSKKGLGRRNLKP MNGAWPPARREM in isoform 2. CuratedVSP_030775

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BG220529 mRNA. No translation available.
AL513424 Genomic DNA. No translation available.
CCDSiCCDS65012.1. [A6NGG3-2]
RefSeqiNP_001258758.1. NM_001271829.1. [A6NGG3-2]
UniGeneiHs.586441.

Genome annotation databases

EnsembliENST00000380683; ENSP00000370058; ENSG00000205549. [A6NGG3-2]
ENST00000380685; ENSP00000370060; ENSG00000205549. [A6NGG3-1]
GeneIDi100129385.
KEGGihsa:100129385.
UCSCiuc031tcu.1. human. [A6NGG3-2]
uc031tcv.1. human. [A6NGG3-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BG220529 mRNA. No translation available.
AL513424 Genomic DNA. No translation available.
CCDSiCCDS65012.1. [A6NGG3-2]
RefSeqiNP_001258758.1. NM_001271829.1. [A6NGG3-2]
UniGeneiHs.586441.

3D structure databases

ProteinModelPortaliA6NGG3.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiA6NGG3.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000380683; ENSP00000370058; ENSG00000205549. [A6NGG3-2]
ENST00000380685; ENSP00000370060; ENSG00000205549. [A6NGG3-1]
GeneIDi100129385.
KEGGihsa:100129385.
UCSCiuc031tcu.1. human. [A6NGG3-2]
uc031tcv.1. human. [A6NGG3-1]

Organism-specific databases

CTDi100129385.
GeneCardsiGC09M016194.
HGNCiHGNC:19054. C9orf92.
neXtProtiNX_A6NGG3.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG113482.
GeneTreeiENSGT00410000028916.
HOGENOMiHOG000111651.
InParanoidiA6NGG3.
OMAiPACVGKR.
OrthoDBiEOG73806S.
TreeFamiTF354093.

Gene expression databases

BgeeiA6NGG3.
GenevestigatoriA6NGG3.

Family and domain databases

ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
  2. "DNA sequence and analysis of human chromosome 9."
    Humphray S.J., Oliver K., Hunt A.R., Plumb R.W., Loveland J.E., Howe K.L., Andrews T.D., Searle S., Hunt S.E., Scott C.E., Jones M.C., Ainscough R., Almeida J.P., Ambrose K.D., Ashwell R.I.S., Babbage A.K., Babbage S., Bagguley C.L.
    , Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beasley H., Beasley O., Bird C.P., Bray-Allen S., Brown A.J., Brown J.Y., Burford D., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Chen Y., Clarke G., Clark S.Y., Clee C.M., Clegg S., Collier R.E., Corby N., Crosier M., Cummings A.T., Davies J., Dhami P., Dunn M., Dutta I., Dyer L.W., Earthrowl M.E., Faulkner L., Fleming C.J., Frankish A., Frankland J.A., French L., Fricker D.G., Garner P., Garnett J., Ghori J., Gilbert J.G.R., Glison C., Grafham D.V., Gribble S., Griffiths C., Griffiths-Jones S., Grocock R., Guy J., Hall R.E., Hammond S., Harley J.L., Harrison E.S.I., Hart E.A., Heath P.D., Henderson C.D., Hopkins B.L., Howard P.J., Howden P.J., Huckle E., Johnson C., Johnson D., Joy A.A., Kay M., Keenan S., Kershaw J.K., Kimberley A.M., King A., Knights A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C., Lloyd D.M., Lovell J., Martin S., Mashreghi-Mohammadi M., Matthews L., McLaren S., McLay K.E., McMurray A., Milne S., Nickerson T., Nisbett J., Nordsiek G., Pearce A.V., Peck A.I., Porter K.M., Pandian R., Pelan S., Phillimore B., Povey S., Ramsey Y., Rand V., Scharfe M., Sehra H.K., Shownkeen R., Sims S.K., Skuce C.D., Smith M., Steward C.A., Swarbreck D., Sycamore N., Tester J., Thorpe A., Tracey A., Tromans A., Thomas D.W., Wall M., Wallis J.M., West A.P., Whitehead S.L., Willey D.L., Williams S.A., Wilming L., Wray P.W., Young L., Ashurst J.L., Coulson A., Blocker H., Durbin R.M., Sulston J.E., Hubbard T., Jackson M.J., Bentley D.R., Beck S., Rogers J., Dunham I.
    Nature 429:369-374(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiCI092_HUMAN
AccessioniPrimary (citable) accession number: A6NGG3
Secondary accession number(s): A6NMF8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 5, 2008
Last sequence update: July 24, 2007
Last modified: January 7, 2015
This is version 46 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 9
    Human chromosome 9: entries, gene names and cross-references to MIM

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.