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A6NGG3

- CI092_HUMAN

UniProt

A6NGG3 - CI092_HUMAN

Protein

Putative uncharacterized protein C9orf92

Gene

C9orf92

Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 1 out of 5- Protein predictedi
  1. Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative uncharacterized protein C9orf92
    Gene namesi
    Name:C9orf92
    OrganismiHomo sapiens (Human)
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
    ProteomesiUP000005640: Chromosome 9

    Organism-specific databases

    HGNCiHGNC:19054. C9orf92.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 7777Putative uncharacterized protein C9orf92PRO_0000316783Add
    BLAST

    Proteomic databases

    PRIDEiA6NGG3.

    Expressioni

    Gene expression databases

    BgeeiA6NGG3.
    GenevestigatoriA6NGG3.

    Structurei

    3D structure databases

    ProteinModelPortaliA6NGG3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiNOG113482.
    HOGENOMiHOG000111651.
    InParanoidiA6NGG3.
    OMAiMELNTNI.
    OrthoDBiEOG73806S.
    TreeFamiTF354093.

    Sequences (2)i

    Sequence statusi: Complete.

    This entry describes 2 isoformsi produced by alternative splicing. Align

    Isoform 1 (identifier: A6NGG3-1) [UniParc]FASTAAdd to Basket

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MARFQRTKER EEDRCSLNIY YVRNTTQGTA PACVGKRMQP SPTGKGGKCC   50
    TVHGLTRKIH NVQPNLQSPI LSAACVD 77
    Length:77
    Mass (Da):8,520
    Last modified:July 24, 2007 - v1
    Checksum:i215CD74E88B64771
    GO
    Isoform 2 (identifier: A6NGG3-2) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         1-1: M → MELNTNIKSKKGLGRRNLKPMNGAWPPARREM

    Note: No experimental confirmation available.

    Show »
    Length:108
    Mass (Da):12,066
    Checksum:iC6E476F84EA79DA1
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti27 – 271Q → R in BG220529. (PubMed:11329013)Curated
    Sequence conflicti72 – 721S → P in BG220529. (PubMed:11329013)Curated

    Alternative sequence

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Alternative sequencei1 – 11M → MELNTNIKSKKGLGRRNLKP MNGAWPPARREM in isoform 2. CuratedVSP_030775

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BG220529 mRNA. No translation available.
    AL513424 Genomic DNA. No translation available.
    CCDSiCCDS65012.1. [A6NGG3-2]
    RefSeqiNP_001258758.1. NM_001271829.1. [A6NGG3-2]
    UniGeneiHs.586441.

    Genome annotation databases

    EnsembliENST00000380683; ENSP00000370058; ENSG00000205549. [A6NGG3-2]
    ENST00000380685; ENSP00000370060; ENSG00000205549. [A6NGG3-1]
    GeneIDi100129385.
    KEGGihsa:100129385.
    UCSCiuc031tcu.1. human. [A6NGG3-2]
    uc031tcv.1. human. [A6NGG3-1]

    Keywords - Coding sequence diversityi

    Alternative splicing

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BG220529 mRNA. No translation available.
    AL513424 Genomic DNA. No translation available.
    CCDSi CCDS65012.1. [A6NGG3-2 ]
    RefSeqi NP_001258758.1. NM_001271829.1. [A6NGG3-2 ]
    UniGenei Hs.586441.

    3D structure databases

    ProteinModelPortali A6NGG3.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi A6NGG3.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENST00000380683 ; ENSP00000370058 ; ENSG00000205549 . [A6NGG3-2 ]
    ENST00000380685 ; ENSP00000370060 ; ENSG00000205549 . [A6NGG3-1 ]
    GeneIDi 100129385.
    KEGGi hsa:100129385.
    UCSCi uc031tcu.1. human. [A6NGG3-2 ]
    uc031tcv.1. human. [A6NGG3-1 ]

    Organism-specific databases

    CTDi 100129385.
    GeneCardsi GC09M016194.
    HGNCi HGNC:19054. C9orf92.
    neXtProti NX_A6NGG3.
    GenAtlasi Search...

    Phylogenomic databases

    eggNOGi NOG113482.
    HOGENOMi HOG000111651.
    InParanoidi A6NGG3.
    OMAi MELNTNI.
    OrthoDBi EOG73806S.
    TreeFami TF354093.

    Gene expression databases

    Bgeei A6NGG3.
    Genevestigatori A6NGG3.

    Family and domain databases

    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    2. "DNA sequence and analysis of human chromosome 9."
      Humphray S.J., Oliver K., Hunt A.R., Plumb R.W., Loveland J.E., Howe K.L., Andrews T.D., Searle S., Hunt S.E., Scott C.E., Jones M.C., Ainscough R., Almeida J.P., Ambrose K.D., Ashwell R.I.S., Babbage A.K., Babbage S., Bagguley C.L.
      , Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beasley H., Beasley O., Bird C.P., Bray-Allen S., Brown A.J., Brown J.Y., Burford D., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Chen Y., Clarke G., Clark S.Y., Clee C.M., Clegg S., Collier R.E., Corby N., Crosier M., Cummings A.T., Davies J., Dhami P., Dunn M., Dutta I., Dyer L.W., Earthrowl M.E., Faulkner L., Fleming C.J., Frankish A., Frankland J.A., French L., Fricker D.G., Garner P., Garnett J., Ghori J., Gilbert J.G.R., Glison C., Grafham D.V., Gribble S., Griffiths C., Griffiths-Jones S., Grocock R., Guy J., Hall R.E., Hammond S., Harley J.L., Harrison E.S.I., Hart E.A., Heath P.D., Henderson C.D., Hopkins B.L., Howard P.J., Howden P.J., Huckle E., Johnson C., Johnson D., Joy A.A., Kay M., Keenan S., Kershaw J.K., Kimberley A.M., King A., Knights A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C., Lloyd D.M., Lovell J., Martin S., Mashreghi-Mohammadi M., Matthews L., McLaren S., McLay K.E., McMurray A., Milne S., Nickerson T., Nisbett J., Nordsiek G., Pearce A.V., Peck A.I., Porter K.M., Pandian R., Pelan S., Phillimore B., Povey S., Ramsey Y., Rand V., Scharfe M., Sehra H.K., Shownkeen R., Sims S.K., Skuce C.D., Smith M., Steward C.A., Swarbreck D., Sycamore N., Tester J., Thorpe A., Tracey A., Tromans A., Thomas D.W., Wall M., Wallis J.M., West A.P., Whitehead S.L., Willey D.L., Williams S.A., Wilming L., Wray P.W., Young L., Ashurst J.L., Coulson A., Blocker H., Durbin R.M., Sulston J.E., Hubbard T., Jackson M.J., Bentley D.R., Beck S., Rogers J., Dunham I.
      Nature 429:369-374(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

    Entry informationi

    Entry nameiCI092_HUMAN
    AccessioniPrimary (citable) accession number: A6NGG3
    Secondary accession number(s): A6NMF8
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: February 5, 2008
    Last sequence update: July 24, 2007
    Last modified: October 1, 2014
    This is version 44 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Human chromosome 9
      Human chromosome 9: entries, gene names and cross-references to MIM

    External Data

    Dasty 3