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Protein

Putative golgin subfamily A member 6C

Gene

GOLGA6C

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Names & Taxonomyi

Protein namesi
Recommended name:
Putative golgin subfamily A member 6C
Gene namesi
Name:GOLGA6C
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 15

Organism-specific databases

HGNCiHGNC:32206. GOLGA6C.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA162389919.

Polymorphism and mutation databases

BioMutaiGOLGA6C.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 693693Putative golgin subfamily A member 6CPRO_0000332249Add
BLAST

Proteomic databases

PRIDEiA6NDK9.

PTM databases

PhosphoSiteiA6NDK9.

Expressioni

Gene expression databases

BgeeiA6NDK9.
CleanExiHS_GOLGA6C.

Organism-specific databases

HPAiHPA044978.
HPA045056.
HPA050087.

Structurei

3D structure databases

ProteinModelPortaliA6NDK9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili73 – 611539Sequence AnalysisAdd
BLAST

Sequence similaritiesi

Belongs to the GOLGA6 family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

GeneTreeiENSGT00530000062932.
HOGENOMiHOG000218631.
HOVERGENiHBG051752.
InParanoidiA6NDK9.
OMAiTIFAPVC.
OrthoDBiEOG71P29T.
PhylomeDBiA6NDK9.
TreeFamiTF316990.

Family and domain databases

InterProiIPR024858. Golgin_A.
[Graphical view]
PANTHERiPTHR10881. PTHR10881. 1 hit.
PfamiPF15070. GOLGA2L5. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A6NDK9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MWPQPYLPPH PMMLEESRQN KLAAAKKKLK EYQQRKSPGI PAGAKTKKKK
60 70 80 90 100
TDSSPETTTS GGGHSPGDSQ YQELAVALES SSVTINQLNE NIESLKQQKK
110 120 130 140 150
QVEHQLEEAK KTNNEIHKAQ MEQLETINIL TLEKADLKTT LYHTKRAARH
160 170 180 190 200
FEEESKDLAG RLQYSLQRIQ ELERALSAVS TQQQEEDRSS SCREAVLQRR
210 220 230 240 250
LQQTIKERAL LNAHVTQVTE SLKQVQLERD EYAKHIKGER ARWQERMWKM
260 270 280 290 300
SVEARTLKEE KKRDIHRIQE LERSLSELKN QMAEPPSLAP PAVTSVVEQL
310 320 330 340 350
QDEAKHLRQE VEGLEGKLQS QVENNQALSL LSKEQKQRLQ EQEEMLREQE
360 370 380 390 400
AQRVREQERL CEQNERLREQ QKTLQEQGER LRKQEQRLRK QEERLRKEEE
410 420 430 440 450
RLQKQEKRLW DQEERLWKKE ERLQKQEERL ALSQNHKLDK QLAEPQCSFE
460 470 480 490 500
DLNNEKKSAL QLEQQVKELQ EKLDEEHLEA ASQRNQQLET QLSLVALPGE
510 520 530 540 550
GDGGQHLDSE EEEAPRPTPN IPEDLESREA TSSFMDLPKE KADGTEQVER
560 570 580 590 600
RELGFVQPSG VTDGMRESFT VYESQGAVPN TRHQEMEDVI RLAQKEEEMK
610 620 630 640 650
VKLLELQELV LPLVGNHEGH GKFLIAAQNP ADEPTPGAPA PQELGAAGEQ
660 670 680 690
DDFYEVSLDN NVEPAPGAAR EGSPHDNPPV QQIVQLSPVM QDT
Length:693
Mass (Da):79,884
Last modified:July 24, 2007 - v1
Checksum:iBEA09FD2D471FB8D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC068338 Genomic DNA. No translation available.
CCDSiCCDS58388.1.
RefSeqiNP_001157876.1. NM_001164404.1.
UniGeneiHs.540230.

Genome annotation databases

EnsembliENST00000300576; ENSP00000300576; ENSG00000167195.
GeneIDi653641.
KEGGihsa:653641.
UCSCiuc002azs.2. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC068338 Genomic DNA. No translation available.
CCDSiCCDS58388.1.
RefSeqiNP_001157876.1. NM_001164404.1.
UniGeneiHs.540230.

3D structure databases

ProteinModelPortaliA6NDK9.
ModBaseiSearch...
MobiDBiSearch...

PTM databases

PhosphoSiteiA6NDK9.

Polymorphism and mutation databases

BioMutaiGOLGA6C.

Proteomic databases

PRIDEiA6NDK9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000300576; ENSP00000300576; ENSG00000167195.
GeneIDi653641.
KEGGihsa:653641.
UCSCiuc002azs.2. human.

Organism-specific databases

CTDi653641.
GeneCardsiGC15P075550.
HGNCiHGNC:32206. GOLGA6C.
HPAiHPA044978.
HPA045056.
HPA050087.
neXtProtiNX_A6NDK9.
PharmGKBiPA162389919.
GenAtlasiSearch...

Phylogenomic databases

GeneTreeiENSGT00530000062932.
HOGENOMiHOG000218631.
HOVERGENiHBG051752.
InParanoidiA6NDK9.
OMAiTIFAPVC.
OrthoDBiEOG71P29T.
PhylomeDBiA6NDK9.
TreeFamiTF316990.

Miscellaneous databases

GenomeRNAii653641.
NextBioi123498.

Gene expression databases

BgeeiA6NDK9.
CleanExiHS_GOLGA6C.

Family and domain databases

InterProiIPR024858. Golgin_A.
[Graphical view]
PANTHERiPTHR10881. PTHR10881. 1 hit.
PfamiPF15070. GOLGA2L5. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Analysis of the DNA sequence and duplication history of human chromosome 15."
    Zody M.C., Garber M., Sharpe T., Young S.K., Rowen L., O'Neill K., Whittaker C.A., Kamal M., Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Kodira C.D., Madan A., Qin S., Yang X., Abbasi N., Abouelleil A.
    , Arachchi H.M., Baradarani L., Birditt B., Bloom S., Bloom T., Borowsky M.L., Burke J., Butler J., Cook A., DeArellano K., DeCaprio D., Dorris L. III, Dors M., Eichler E.E., Engels R., Fahey J., Fleetwood P., Friedman C., Gearin G., Hall J.L., Hensley G., Johnson E., Jones C., Kamat A., Kaur A., Locke D.P., Madan A., Munson G., Jaffe D.B., Lui A., Macdonald P., Mauceli E., Naylor J.W., Nesbitt R., Nicol R., O'Leary S.B., Ratcliffe A., Rounsley S., She X., Sneddon K.M.B., Stewart S., Sougnez C., Stone S.M., Topham K., Vincent D., Wang S., Zimmer A.R., Birren B.W., Hood L., Lander E.S., Nusbaum C.
    Nature 440:671-675(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiGOG6C_HUMAN
AccessioniPrimary (citable) accession number: A6NDK9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: July 24, 2007
Last modified: June 24, 2015
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

Could be the product of a pseudogene. Maps to a duplicated region on chromosome 15; the gene is present in at least 4 almost identical copies.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 15
    Human chromosome 15: entries, gene names and cross-references to MIM
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.