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Protein

Uncharacterized protein C19orf71

Gene

C19orf71

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein C19orf71
Gene namesi
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 19

Organism-specific databases

HGNCiHGNC:34496. C19orf71.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA164716956.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 209209Uncharacterized protein C19orf71PRO_0000332195Add
BLAST

Proteomic databases

PaxDbiA6NCJ1.
PRIDEiA6NCJ1.

Expressioni

Gene expression databases

BgeeiA6NCJ1.
GenevestigatoriA6NCJ1.

Organism-specific databases

HPAiHPA048654.

Structurei

3D structure databases

ProteinModelPortaliA6NCJ1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG47706.
GeneTreeiENSGT00390000004282.
HOGENOMiHOG000090216.
InParanoidiA6NCJ1.
OMAiEPYCPST.
OrthoDBiEOG7FJH1C.
PhylomeDBiA6NCJ1.
TreeFamiTF336002.

Family and domain databases

InterProiIPR029203. DUF4531.
[Graphical view]
PfamiPF15041. DUF4531. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A6NCJ1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQTLRQEAAR PCIPSGTLEA SFPAPLYSDD YLSLEGSRWP PAIRQATRWK
60 70 80 90 100
YTPMGRDAAG QLWYTGLTNS DAWEAWYNLP RAPASPFREA YNRWHSCYQH
110 120 130 140 150
RECSMPSAYT QHLRETAWHD PIVPAQYQAP STRWGSALWK DRPIRGKEYV
160 170 180 190 200
LNRNRYGVEP LWRASDYVPS LSAPQRPPGT TQNYREWVLE PYCPSTCQRS

PPSLTPTPR
Length:209
Mass (Da):24,176
Last modified:July 22, 2008 - v2
Checksum:i2D40E238DBA50289
GO

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti83 – 831P → L.
Corresponds to variant rs12608919 [ dbSNP | Ensembl ].
VAR_061253
Natural varianti137 – 1371A → V.
Corresponds to variant rs6510758 [ dbSNP | Ensembl ].
VAR_061254

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005786 Genomic DNA. No translation available.
CCDSiCCDS45918.1.
RefSeqiNP_001129052.1. NM_001135580.1.
UniGeneiHs.664978.

Genome annotation databases

EnsembliENST00000329493; ENSP00000327950; ENSG00000183397.
GeneIDi100128569.
KEGGihsa:100128569.
UCSCiuc010xhm.2. human.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005786 Genomic DNA. No translation available.
CCDSiCCDS45918.1.
RefSeqiNP_001129052.1. NM_001135580.1.
UniGeneiHs.664978.

3D structure databases

ProteinModelPortaliA6NCJ1.
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiA6NCJ1.
PRIDEiA6NCJ1.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000329493; ENSP00000327950; ENSG00000183397.
GeneIDi100128569.
KEGGihsa:100128569.
UCSCiuc010xhm.2. human.

Organism-specific databases

CTDi100128569.
GeneCardsiGC19P003539.
HGNCiHGNC:34496. C19orf71.
HPAiHPA048654.
neXtProtiNX_A6NCJ1.
PharmGKBiPA164716956.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG47706.
GeneTreeiENSGT00390000004282.
HOGENOMiHOG000090216.
InParanoidiA6NCJ1.
OMAiEPYCPST.
OrthoDBiEOG7FJH1C.
PhylomeDBiA6NCJ1.
TreeFamiTF336002.

Miscellaneous databases

GenomeRNAii100128569.
NextBioi20771643.

Gene expression databases

BgeeiA6NCJ1.
GenevestigatoriA6NCJ1.

Family and domain databases

InterProiIPR029203. DUF4531.
[Graphical view]
PfamiPF15041. DUF4531. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The DNA sequence and biology of human chromosome 19."
    Grimwood J., Gordon L.A., Olsen A.S., Terry A., Schmutz J., Lamerdin J.E., Hellsten U., Goodstein D., Couronne O., Tran-Gyamfi M., Aerts A., Altherr M., Ashworth L., Bajorek E., Black S., Branscomb E., Caenepeel S., Carrano A.V.
    , Caoile C., Chan Y.M., Christensen M., Cleland C.A., Copeland A., Dalin E., Dehal P., Denys M., Detter J.C., Escobar J., Flowers D., Fotopulos D., Garcia C., Georgescu A.M., Glavina T., Gomez M., Gonzales E., Groza M., Hammon N., Hawkins T., Haydu L., Ho I., Huang W., Israni S., Jett J., Kadner K., Kimball H., Kobayashi A., Larionov V., Leem S.-H., Lopez F., Lou Y., Lowry S., Malfatti S., Martinez D., McCready P.M., Medina C., Morgan J., Nelson K., Nolan M., Ovcharenko I., Pitluck S., Pollard M., Popkie A.P., Predki P., Quan G., Ramirez L., Rash S., Retterer J., Rodriguez A., Rogers S., Salamov A., Salazar A., She X., Smith D., Slezak T., Solovyev V., Thayer N., Tice H., Tsai M., Ustaszewska A., Vo N., Wagner M., Wheeler J., Wu K., Xie G., Yang J., Dubchak I., Furey T.S., DeJong P., Dickson M., Gordon D., Eichler E.E., Pennacchio L.A., Richardson P., Stubbs L., Rokhsar D.S., Myers R.M., Rubin E.M., Lucas S.M.
    Nature 428:529-535(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiCS071_HUMAN
AccessioniPrimary (citable) accession number: A6NCJ1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: July 22, 2008
Last modified: January 7, 2015
This is version 49 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 19
    Human chromosome 19: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.