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A6N0B6

- A6N0B6_ORYSI

UniProt

A6N0B6 - A6N0B6_ORYSI

Protein

Ribulose bisphosphate carboxylase small chain

Gene

OsI_38042

Organism
Oryza sativa subsp. indica (Rice)
Status
Unreviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 49 (01 Oct 2014)
      Sequence version 1 (24 Jul 2007)
      Previous versions | rss
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    Functioni

    RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site.UniRule annotationSAAS annotation

    Catalytic activityi

    2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.UniRule annotationSAAS annotation
    3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.UniRule annotationSAAS annotation

    GO - Molecular functioni

    1. copper ion binding Source: EnsemblPlants/Gramene
    2. monooxygenase activity Source: UniProtKB-KW
    3. ribulose-bisphosphate carboxylase activity Source: UniProtKB-EC

    GO - Biological processi

    1. carbon fixation Source: UniProtKB-KW
    2. chloroplast ribulose bisphosphate carboxylase complex biogenesis Source: EnsemblPlants/Gramene
    3. photorespiration Source: UniProtKB-KW
    4. photosynthesis Source: UniProtKB-KW
    5. response to blue light Source: EnsemblPlants/Gramene
    6. response to cold Source: EnsemblPlants/Gramene
    7. response to far red light Source: EnsemblPlants/Gramene
    8. response to red light Source: EnsemblPlants/Gramene

    Keywords - Molecular functioni

    LyaseUniRule annotationSAAS annotation, MonooxygenaseUniRule annotationSAAS annotation, Oxidoreductase

    Keywords - Biological processi

    Carbon dioxide fixationUniRule annotationSAAS annotation, PhotorespirationUniRule annotationSAAS annotation, PhotosynthesisUniRule annotationSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribulose bisphosphate carboxylase small chainUniRule annotation (EC:4.1.1.39UniRule annotation)
    Gene namesi
    ORF Names:OsI_38042Imported
    OrganismiOryza sativa subsp. indica (Rice)Imported
    Taxonomic identifieri39946 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza

    Subcellular locationi

    GO - Cellular componenti

    1. apoplast Source: EnsemblPlants/Gramene
    2. chloroplast envelope Source: EnsemblPlants/Gramene
    3. chloroplast thylakoid membrane Source: EnsemblPlants/Gramene
    4. cytosolic ribosome Source: EnsemblPlants/Gramene
    5. thylakoid lumen Source: EnsemblPlants/Gramene

    Keywords - Cellular componenti

    ChloroplastSAAS annotation, Plastid

    Interactioni

    Subunit structurei

    8 large chains + 8 small chains.UniRule annotationSAAS annotation

    Protein-protein interaction databases

    STRINGi39947.LOC_Os12g19381.1.

    Structurei

    3D structure databases

    SMRiA6N0B6. Positions 49-169.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RuBisCO small chain family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG4451.
    HOGENOMiHOG000141332.

    Family and domain databases

    Gene3Di3.30.190.10. 1 hit.
    InterProiIPR024681. RuBisCO_sc.
    IPR000894. RuBisCO_sc_dom.
    IPR024680. RuBisCO_ssu_N.
    [Graphical view]
    PfamiPF12338. RbcS. 1 hit.
    PF00101. RuBisCO_small. 1 hit.
    [Graphical view]
    PRINTSiPR00152. RUBISCOSMALL.
    SUPFAMiSSF55239. SSF55239. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A6N0B6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAPTVMASSA TSVAPFQGLK STAGLPVSRR STNSGFGNVS NGGRIKCMQV    50
    WPIEGIKKFE TLSYLPPLTV EDLLKQIEYL LRSKWVPCLE FSKVGFVYRE 100
    NHRSPGYYDG RYWTMWKLPM FGCTDATQVL KELEEAKKAY PDAFVRIIGF 150
    DNVRQVQLIS FIAYKPPGCE ESGGN 175
    Length:175
    Mass (Da):19,631
    Last modified:July 24, 2007 - v1
    Checksum:iBB1F731484324EF9
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF576098 mRNA. Translation: ABR25686.1.
    CM000137 Genomic DNA. Translation: EEC69124.1.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    EF576098 mRNA. Translation: ABR25686.1 .
    CM000137 Genomic DNA. Translation: EEC69124.1 .

    3D structure databases

    SMRi A6N0B6. Positions 49-169.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 39947.LOC_Os12g19381.1.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Phylogenomic databases

    eggNOGi COG4451.
    HOGENOMi HOG000141332.

    Family and domain databases

    Gene3Di 3.30.190.10. 1 hit.
    InterProi IPR024681. RuBisCO_sc.
    IPR000894. RuBisCO_sc_dom.
    IPR024680. RuBisCO_ssu_N.
    [Graphical view ]
    Pfami PF12338. RbcS. 1 hit.
    PF00101. RuBisCO_small. 1 hit.
    [Graphical view ]
    PRINTSi PR00152. RUBISCOSMALL.
    SUPFAMi SSF55239. SSF55239. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The genomes of Oryza sativa: a history of duplications."
      Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.
      , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K., Yang H.
      PLoS Biol. 3:266-281(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
    2. "Improved gene annotation of the rice (Oryza sativa) genomes."
      Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J., Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R., Kristiansen K., Wong G.K.-S.
      Submitted (SEP-2006) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    3. "A comparative transcriptome map of early and late salinity stress responses in contrasting genotypes of Oryza sativa L."
      Kumari S., Panjabi V., Singla-Pareek S.L., Sopory S.K., Pareek A.
      Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    4. Cited for: NUCLEOTIDE SEQUENCE.

    Entry informationi

    Entry nameiA6N0B6_ORYSI
    AccessioniPrimary (citable) accession number: A6N0B6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: July 24, 2007
    Last sequence update: July 24, 2007
    Last modified: October 1, 2014
    This is version 49 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)