Skip Header

Contribute Send feedback
Read comments (?) or add your own

A6LST4 (A6LST4_CLOB8) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 30. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Beta-galactosidase PIRNR PIRNR001084
Short name=Beta-gal PIRNR PIRNR001084
EC=3.2.1.23 PIRNR PIRNR001084
Gene names
Ordered Locus Names:Cbei_1232
OrganismClostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium acetobutylicum) [Complete proteome] [HAMAP] EMBL ABR33414.1
Taxonomic identifier290402 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Clostridiales › Clostridiaceae › Clostridium

Protein attributes

Sequence length697 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Hydrolysis of terminal non-reducing beta-D-galactose residues in beta-D-galactosides. PIRNR PIRNR001084

Sequence similarities

Belongs to the glycosyl hydrolase 42 family. PIRNR PIRNR001084

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1581Proton donor By similarity PIRSR PIRSR001084-1
Active site3231Nucleophile By similarity PIRSR PIRSR001084-1
Metal binding1231Zinc By similarity PIRSR PIRSR001084-3
Metal binding1631Zinc By similarity PIRSR PIRSR001084-3
Metal binding1651Zinc By similarity PIRSR PIRSR001084-3
Metal binding1681Zinc By similarity PIRSR PIRSR001084-3
Binding site1191Substrate By similarity PIRSR PIRSR001084-2
Binding site1571Substrate By similarity PIRSR PIRSR001084-2
Binding site3311Substrate By similarity PIRSR PIRSR001084-2

Sequences

Sequence LengthMass (Da)Tools
A6LST4 [UniParc].

Last modified July 24, 2007. Version 1.
Checksum: 79BC4A44A84C0606

FASTA69780,745
        10         20         30         40         50         60 
MKKEFPVLNS KINGFLHGGD YNPDQWLNYP EVLKEDVRLM KLANCNCVSI NIFGWSAIEP 

        70         80         90        100        110        120 
EEGKYTFEWL DKIMNDMAEN NIHVILSTPS GARPAWMSEK YPEVLRVNSD RCKNLHGQRH 

       130        140        150        160        170        180 
NHCFTSPVYR KKTYEINKIL AERYKDHPAL IMWHVSNEYG GECHCDLCQD AFREWLKRKY 

       190        200        210        220        230        240 
DNNLDKLNEA WWTGFWSHRF NSWSQIESPS EKGEMFVHGH NLDWKRFVTD QTIDFYKNEI 

       250        260        270        280        290        300 
APIREITPNI PVTANFMGNY PRMGLFTGLD YWKFAKEVDV VTWDNYPAWH NDFESTEDLA 

       310        320        330        340        350        360 
ANVSFVHDIY RSLKGGHPFL IMESTPSLVN WHDTNKLKRP GMHLLSSMQG VAHGADSVLY 

       370        380        390        400        410        420 
FQWRKGRGAS EKFHGAVVDH CGHENTRVFR EVTEVGEVLK KIKEIQGSIK ESEVAIIFDV 

       430        440        450        460        470        480 
ENLWAIDDAQ GLKKYRKGYE ESCQAAYKVF WENGISVDII NMDCDISDYK LVIAPMLYMI 

       490        500        510        520        530        540 
RPNVAERINE FVKTGGTFVT TYFSGMVDEN DLCFLGGFPG PLREVTGIWS EEIDSLYDNE 

       550        560        570        580        590        600 
VNYIEFKNDK IKELKSQYEV KDYCDLIHVE TAEVLGVYKE DFYADMPALT VNNYGDGRAY 

       610        620        630        640        650        660 
YISARTGADF NNDFYSKLFK DLDIKSVIEG ELPQGVTAQM RSNKNNKYTF IMNFTEEEKK 

       670        680        690 
VDLGEEIYFD MLSGEEISGK IILGKYGLKI LKQINCN

« Hide

References

[1]"Complete sequence of Clostridium beijerinckii NCIMB 8052."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Tapia R., Brainard J., Schmutz J., Larimer F. expand/collapse author list , Land M., Hauser L., Kyrpides N., Mikhailova N., Bennet G., Cann I., Chen J.-S., Contreras A.L., Jones D., Kashket E., Mitchell W., Stoddard S., Schwarz W., Qureshi N., Young M., Shi Z., Ezeji T., White B., Blaschek H., Richardson P.
Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 51743 / NCIMB 8052.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP000721 Genomic DNA. Translation: ABR33414.1.
RefSeqYP_001308370.1. NC_009617.1.

3D structure databases

ProteinModelPortalA6LST4.
ModBaseSearch...

Protein-protein interaction databases

STRINGA6LST4.

Protein family/group databases

CAZyGH42. Glycoside Hydrolase Family 42.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID5292458.
GenomeReviewsGene locus Cbei_1232 in contig CP000721_GR.
KEGGcbe:Cbei_1232.
PATRIC19346434. VBICloBei69853_1263.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1874.
HOGENOMHBG476453.
OMAHGSDTVQ.

Family and domain databases

InterProIPR013739. Beta_galactosidase_C.
IPR013738. Beta_galactosidase_Trimer.
IPR003476. Glyco_hydro_42.
IPR013529. Glyco_hydro_42_N.
IPR013781. Glyco_hydro_subgr_catalytic.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
Gene3DG3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
KOK12308.
PfamPF02449. Glyco_hydro_42. 1 hit.
PF08533. Glyco_hydro_42C. 1 hit.
PF08532. Glyco_hydro_42M. 1 hit.
[Graphical view]
PIRSFPIRSF001084. B-galactosidase. 1 hit.
SUPFAMSSF51445. Glyco_hydro_cat. 1 hit.
ProtoNetSearch...

Entry information

Entry nameA6LST4_CLOB8
AccessionPrimary (citable) accession number: A6LST4
Entry history
Integrated into UniProtKB/TrEMBL: July 24, 2007
Last sequence update: July 24, 2007
Last modified: December 14, 2011
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info