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Protein
Submitted name:

Channel protein, hemolysin III family

Gene

Tmel_0092

Organism
Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciTMEL391009:GHM1-92-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Channel protein, hemolysin III familyImported
Gene namesi
Ordered Locus Names:Tmel_0092Imported
OrganismiThermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429)Imported
Taxonomic identifieri391009 [NCBI]
Taxonomic lineageiBacteriaThermotogaeThermotogalesFervidobacteriaceaeThermosipho
Proteomesi
  • UP000001110 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei21 – 39HelicalSequence analysisAdd BLAST19
Transmembranei45 – 67HelicalSequence analysisAdd BLAST23
Transmembranei79 – 101HelicalSequence analysisAdd BLAST23
Transmembranei107 – 127HelicalSequence analysisAdd BLAST21
Transmembranei134 – 154HelicalSequence analysisAdd BLAST21
Transmembranei160 – 181HelicalSequence analysisAdd BLAST22
Transmembranei188 – 206HelicalSequence analysisAdd BLAST19

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi391009.Tmel_0092.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4108UT2. Bacteria.
COG1272. LUCA.
HOGENOMiHOG000039438.
KOiK11068.
OMAiMSHEKPL.
OrthoDBiPOG091H02AC.

Family and domain databases

InterProiIPR004254. AdipoR/HlyIII-related.
IPR005744. Hy-lIII.
[Graphical view]
PANTHERiPTHR20855. PTHR20855. 1 hit.
PTHR20855:SF3. PTHR20855:SF3. 1 hit.
PfamiPF03006. HlyIII. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01065. hlyIII. 1 hit.

Sequencei

Sequence statusi: Complete.

A6LJ68-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKNLEKYTLG EEIANAVTHG VGALAALFGL IWLIIYSSFG TPLKIVSFTI
60 70 80 90 100
YGCSLFFLYL ISTLYHSMCN QKAKYIFEIM DHSAIFLLIA GTYTPFLLMV
110 120 130 140 150
IKGSLGWTLF AVVWVLAIFG MVFKVFFVRD FMVVSTLIYI LMGWMIVFFI
160 170 180 190 200
KKLIMNFNSF GITLLVIGGV LYTLGSIFYM YRKIKYHHMI WHLFVIAGSV

FHYLAILQI
Length:209
Mass (Da):23,979
Last modified:July 24, 2007 - v1
Checksum:iC8246A148D0015C3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000716 Genomic DNA. Translation: ABR29969.1.
RefSeqiWP_012056331.1. NC_009616.1.

Genome annotation databases

EnsemblBacteriaiABR29969; ABR29969; Tmel_0092.
KEGGitme:Tmel_0092.
PATRICi23921271. VBITheMel19269_0097.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000716 Genomic DNA. Translation: ABR29969.1.
RefSeqiWP_012056331.1. NC_009616.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi391009.Tmel_0092.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABR29969; ABR29969; Tmel_0092.
KEGGitme:Tmel_0092.
PATRICi23921271. VBITheMel19269_0097.

Phylogenomic databases

eggNOGiENOG4108UT2. Bacteria.
COG1272. LUCA.
HOGENOMiHOG000039438.
KOiK11068.
OMAiMSHEKPL.
OrthoDBiPOG091H02AC.

Enzyme and pathway databases

BioCyciTMEL391009:GHM1-92-MONOMER.

Family and domain databases

InterProiIPR004254. AdipoR/HlyIII-related.
IPR005744. Hy-lIII.
[Graphical view]
PANTHERiPTHR20855. PTHR20855. 1 hit.
PTHR20855:SF3. PTHR20855:SF3. 1 hit.
PfamiPF03006. HlyIII. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01065. hlyIII. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiA6LJ68_THEM4
AccessioniPrimary (citable) accession number: A6LJ68
Entry historyi
Integrated into UniProtKB/TrEMBL: July 24, 2007
Last sequence update: July 24, 2007
Last modified: November 2, 2016
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.