A6LIX9 (RL9_PARD8) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
50S ribosomal protein L9

Gene names

Name:	rplI
Ordered Locus Names:	BDI_3969

Organism

Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) [Complete proteome] [HAMAP]

Taxonomic identifier

435591 [NCBI]

Taxonomic lineage

Bacteria › Bacteroidetes › Bacteroidia › Bacteroidales › Porphyromonadaceae › Parabacteroides

Protein attributes

Sequence length	148 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Binds to the 23S rRNA By similarity. HAMAP MF_00503
Sequence similarities	Belongs to the ribosomal protein L9P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: UniProtKB-KW structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 148	148	50S ribosomal protein L9 HAMAP MF_00503		PRO_1000014825

Sequences

	Sequence		Length	Mass (Da)
	A6LIX9 [UniParc]. Last modified July 24, 2007. Version 1. Checksum: 65169E599A004DCC	FASTA	148	16,016
	10 20 30 40 50 60 MQVILKEDVV NLGYKDDIVT VKDGYGRNFL IPTGKAVIAS ESAKKVLAEN LKQRAHKLAK 70 80 90 100 110 120 IKEDAQTLAA KLEGVALTIG AKTSSTGTIF GSVTNIQVAE ALAKAGFENI DRKIIYIKES 130 140 VKEVGSYKAV LKLHKEVSVE VPFEVVSE

References

[1]

"Evolution of symbiotic bacteria in the distal human intestine." Xu J., Mahowald M.A., Ley R.E., Lozupone C.A., Hamady M., Martens E.C., Henrissat B., Coutinho P.M., Minx P., Latreille P., Cordum H., Van Brunt A., Kim K., Fulton R.S., Fulton L.A., Clifton S.W., Wilson R.K., Knight R.D., Gordon J.I. PLoS Biol. 5:1574-1586(2007) [PubMed: 17579514] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 8503 / DSM 20701 / NCTC 11152.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000140 Genomic DNA. Translation: ABR45643.1.
RefSeq	YP_001305265.1. NC_009615.1.
3D structure databases
ProteinModelPortal	A6LIX9.
ModBase	Search...
Protein-protein interaction databases
STRING	A6LIX9.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	5309118.
GenomeReviews	Gene locus BDI_3969 in contig CP000140_GR.
KEGG	pdi:BDI_3969.
PATRIC	22851170. VBIParDis29947_3912.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0359.
HOGENOM	HBG586587.
OMA	SGKLFGT.
ProtClustDB	PRK00137.
Enzyme and pathway databases
BioCyc	PDIS435591:BDI_3969-MONOMER.
Family and domain databases
HAMAP	MF_00503. Ribosomal_L9. [Tree]
InterPro	IPR000244. Ribosomal_L9. IPR009027. Ribosomal_L9/RNase_H1_N. IPR020594. Ribosomal_L9_bac/chp. IPR020069. Ribosomal_L9_C. IPR020070. Ribosomal_L9_N. [Graphical view]
Gene3D	G3DSA:3.10.430.100. Ribosomal_L9. 1 hit. G3DSA:3.40.5.10. Ribosomal_L9. 1 hit.
KO	K02939.
PANTHER	PTHR21368. Ribosomal_L9. 1 hit.
Pfam	PF03948. Ribosomal_L9_C. 1 hit. PF01281. Ribosomal_L9_N. 1 hit. [Graphical view]
SUPFAM	SSF55658. L9_N_like. 1 hit. SSF55653. Ribosomal_L9. 1 hit.
TIGRFAMs	TIGR00158. L9. 1 hit.
PROSITE	PS00651. RIBOSOMAL_L9. False negative. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RL9_PARD8

Accession

Primary (citable) accession number: A6LIX9

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 15, 2008
Last sequence update:	July 24, 2007
Last modified:	December 14, 2011
This is version 34 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program