Glycoside hydrolase family 33, candidate sialidase - Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)

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A6LG40 (A6LG40_PARD8) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 38. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Glycoside hydrolase family 33, candidate sialidase EMBL ABR44654.1

Gene names

Ordered Locus Names:

BDI_2946

Organism

Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) [Complete proteome] [HAMAP] EMBL ABR44654.1

Taxonomic identifier

Taxonomic lineage

Bacteria › Bacteroidetes › Bacteroidia › Bacteroidales › Porphyromonadaceae › Parabacteroides ›

Protein attributes

Sequence length	541 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Molecular function	Hydrolase EMBL ABR44654.1
Technical term	3D-structure PDB 4FJ6 Complete proteome
Gene Ontology (GO)
Biological_process	pathogenesis Inferred from electronic annotation. Source: InterPro
Molecular_function	exo-alpha-sialidase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

A6LG40 [UniParc].

Last modified July 24, 2007. Version 1.
Checksum: 0EBE5CECA9F394CD
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541

60,191

        10         20         30         40         50         60 
MKKTFLYFCL LFIVQTAFAA DSIYVREQQI PILIDRIDNV LYEMRIPAQK GDVLNEITIQ 

        70         80         90        100        110        120 
IGDNVDLSDI QAIRLFYSGV EAPSRKGEHF SPVTYISSHI PGNTRKALES YSVRQDEVTA 

       130        140        150        160        170        180 
PLSRTVKLTS KQPMLKGINY FWVSIQMKPE TSLLAKVATT MPNAQINNKP INITWKGKVD 

       190        200        210        220        230        240 
ERHVGIGVRQ AGDDGSAAFR IPGLVTTNNG TLLGVYDIRY NSSVDLQEKI DIGVSRSTDK 

       250        260        270        280        290        300 
GQTWEPMRVA MTFKQTDGLP HGQNGVGDPS ILVDEKTNTI WVVAAWTHGM GNERAWWNSM 

       310        320        330        340        350        360 
PGMTPDETAQ LMLVKSEDDG KTWSEPINIT SQVKDPSWYF LLQGPGRGIT MQDGTLVFPI 

       370        380        390        400        410        420 
QFIDATRVPN AGIMYSKDRG KTWHLHNLAR TNTTEAQVAE VEPGVLMLNM RDNRGGSRAV 

       430        440        450        460        470        480 
ATTKDLGKTW TEHPSSRSAL QESVCMASLI KVNAKDNITG KDLLLFSNPN TTKGRNHITI 

       490        500        510        520        530        540 
KASLDGGLTW PTEHQVLLDE AEGWGYSCLS MIDKETVGIF YESSVAHMTF QAVKLQDLIH 


Q

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Evolution of symbiotic bacteria in the distal human intestine." Xu J., Mahowald M.A., Ley R.E., Lozupone C.A., Hamady M., Martens E.C., Henrissat B., Coutinho P.M., Minx P., Latreille P., Cordum H., Van Brunt A., Kim K., Fulton R.S., Fulton L.A., Clifton S.W., Wilson R.K., Knight R.D., Gordon J.I. PLoS Biol. 5:1574-1586(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 8503 / DSM 20701 / NCTC 11152.
[2]	"Crystal structure of a glycoside hydrolase family 33, candidate sialidase (BDI_2946) from Parabacteroides distasonis ATCC 8503 at 1.90 A resolution." JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) Submitted (JUN-2012) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS) OF 20-541.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

CP000140 Genomic DNA. Translation: ABR44654.1.

RefSeq

YP_001304276.1. NC_009615.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
4FJ6	X-ray	1.90	A/B/C/D	20-541	[»]

ModBase

Protein-protein interaction databases

STRING

435591.BDI_2946.

Protein family/group databases

CAZy

GH33. Glycoside Hydrolase Family 33.

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

ABR44654; ABR44654; BDI_2946.

GeneID

KEGG

PATRIC

22849100. VBIParDis29947_2908.

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

HOGENOM

KO

OMA

ProtClustDB

Family and domain databases

Gene3D

2.120.10.10. 1 hit.

InterPro

IPR026948. Sialidase.
IPR026856. Sialidase_fam.
IPR008377. Sialidase_trypan.
IPR011040. Sialidases.
[Graphical view]

PANTHER

PTHR10628. PTHR10628. 1 hit.
PTHR10628:SF5. PTHR10628:SF5. 1 hit.

PRINTS

PR01803. TCSIALIDASE.

SUPFAM

SSF50939. Sialidase. 1 hit.

ProtoNet

Entry information

Entry name

A6LG40_PARD8

Accession

Primary (citable) accession number: A6LG40

Entry history

Integrated into UniProtKB/TrEMBL:	July 24, 2007
Last sequence update:	July 24, 2007
Last modified:	May 1, 2013
This is version 38 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info